Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_D14
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    32   0.083
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.19 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.4  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   7.2  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 32.3 bits (70), Expect = 0.083
 Identities = 22/66 (33%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
 Frame = +1

Query: 457 RPPXSPXXXPHEPXXPXXXPXPXXPGSXXXPPXXSKXPVPXVGAXP--XPPXXPLXPXXX 630
           RPP S    P  P  P   P    P     PP  S  P P   A P   PP  P  P   
Sbjct: 138 RPPTSA---PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAV 194

Query: 631 FPXPTR 648
            P P +
Sbjct: 195 PPMPPK 200



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 18/75 (24%), Positives = 21/75 (28%)
 Frame = +1

Query: 529 PGSXXXPPXXSKXPVPXVGAXPXPPXXPLXPXXXFPXPTRXRXXGXCXRXXXGXXPXXRP 708
           P S   PP       P   A P P   P  P    P P++                  + 
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183

Query: 709 PPXXP*TPQXXPXRP 753
           PP  P  P   P  P
Sbjct: 184 PPSAPSLPSAVPPMP 198


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 26/93 (27%), Positives = 31/93 (33%)
 Frame = +1

Query: 364 APPPSXXXXSHRXXXXXAPHRGSLXXSXXAARPPXSPXXXPHEPXXPXXXPXPXXPGSXX 543
           AP       + R      P   SL  S   + PP +P   P     P   P P  P +  
Sbjct: 400 APALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPM--GAPAAPPLP--PSAPI 455

Query: 544 XPPXXSKXPVPXVGAXPXPPXXPLXPXXXFPXP 642
            PP  +  P     A P PP  P  P    P P
Sbjct: 456 APPLPAGMPA----APPLPPAAPAPPPAPAPAP 484


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/63 (25%), Positives = 18/63 (28%)
 Frame = +1

Query: 454  ARPPXSPXXXPHEPXXPXXXPXPXXPGSXXXPPXXSKXPVPXVGAXPXPPXXPLXPXXXF 633
            A P  +P   P     P        P     PP  S  P+P       PP  P       
Sbjct: 1684 AHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSV 1743

Query: 634  PXP 642
            P P
Sbjct: 1744 PNP 1746



 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/51 (27%), Positives = 15/51 (29%)
 Frame = +1

Query: 469  SPXXXPHEPXXPXXXPXPXXPGSXXXPPXXSKXPVPXVGAXPXPPXXPLXP 621
            +P   P  P        P  PG     P  S  P P       PP  P  P
Sbjct: 1443 APQVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNVP 1493


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/65 (27%), Positives = 19/65 (29%)
 Frame = +1

Query: 442  SXXAARPPXSPXXXPHEPXXPXXXPXPXXPGSXXXPPXXSKXPVPXVGAXPXPPXXPLXP 621
            S   + PP  P      P  P     P  P     PP     P P V A P P      P
Sbjct: 1057 SGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPV----PKPSVAAPPVPKPSVAVP 1112

Query: 622  XXXFP 636
                P
Sbjct: 1113 PVPAP 1117


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 320 LRSLISNLSNTCDLTPLPEWSCEQSAW 240
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,456,030
Number of Sequences: 5004
Number of extensions: 15146
Number of successful extensions: 57
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)