Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_D13
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.063
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.25 

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 32.7 bits (71), Expect = 0.063
 Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 2/58 (3%)
 Frame = -2

Query: 619 GXGGXXXGPAXXPPPPXPGWGXVXX--GSXXRGXXEGGXGXGXXXNXGGXXGYXXGPG 452
           G GG   G    PP P  G+G      G        GG G G     GG  G+  GPG
Sbjct: 189 GFGGFGGGSGGPPPGPG-GFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG 245


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 21/68 (30%), Positives = 22/68 (32%), Gaps = 3/68 (4%)
 Frame = +3

Query: 471 PXXPPXFXXSPXPXP---PSXXPRXXDPXXTXPHPGXGGGGXXAGPXXXPPXPXXXFXSG 641
           P  P     +P P P   P   P    P    P PG  G    AGP   PP P      G
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG----AGPPPPPPPPPAVSAGG 789

Query: 642 SXXXPXXP 665
           S      P
Sbjct: 790 SRYYAPAP 797



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/44 (29%), Positives = 13/44 (29%)
 Frame = +3

Query: 453 PGPXXYPXXPPXFXXSPXPXPPSXXPRXXDPXXTXPHPGXGGGG 584
           P P   P   P     P P PP        P    P P    GG
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,383
Number of Sequences: 5004
Number of extensions: 20249
Number of successful extensions: 50
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)