Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_D13
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              27   0.20 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +3

Query: 552  TXPHPGXGGGGXXAGPXXXPPXPXXXFXSGSXXXP 656
            T PHPG G  G    P   P        SGS   P
Sbjct: 1747 TFPHPGNGHSGTMGPPVGHPTNASAHSRSGSQSMP 1781


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
 Frame = +3

Query: 513 PPSXXPRXXDPXXTXPHPGXG----GGGXXAGPXXXPP 614
           PPS  P    P    PH G       G    GP   PP
Sbjct: 313 PPSYHPHQHHPSQYHPHRGSSPHHQHGNHTMGPTMGPP 350


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,697
Number of Sequences: 438
Number of extensions: 2835
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)