Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_D10
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...   142   6e-35
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...   113   2e-26
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch...    27   2.9  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   5.1  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    26   5.1  
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    26   6.7  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   6.7  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score =  142 bits (343), Expect = 6e-35
 Identities = 63/117 (53%), Positives = 88/117 (75%), Gaps = 1/117 (0%)
 Frame = -2

Query: 617 MYSNXPLYGARXVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIES-AGNPHPWQH 441
           +YSN P+ GAR    IL+N  L++QW G+V  M++R+ +MR  LR  +E    N H W+H
Sbjct: 320 LYSNPPVNGARIANHILSNPALREQWAGEVVGMSERLKSMRKALRNILEKDLKNKHSWKH 379

Query: 440 ITDQIGMFCFTGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAIHKVTS 270
           ITDQIGMFC+TGL P+QV+ L K++H+YLTK+GRIS++G+++ NV Y AEAI+ VTS
Sbjct: 380 ITDQIGMFCYTGLNPQQVDVLAKQYHIYLTKNGRISISGLNTSNVRYFAEAINAVTS 436


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score =  113 bits (273), Expect = 2e-26
 Identities = 51/110 (46%), Positives = 73/110 (66%)
 Frame = -2

Query: 611 SNXPLYGARXVQEILTNAELKKQWLGDVKQMADRIITMRSQLRAGIESAGNPHPWQHITD 432
           SN P YGAR   EIL + +L  +W  D+K M+ RII MR +LR  + +   P  W HIT 
Sbjct: 293 SNPPAYGARIAAEILNSPQLFAEWEQDLKTMSSRIIEMRKRLRDSLVALKTPGSWDHITQ 352

Query: 431 QIGMFCFTGLKPEQVERLTKEFHVYLTKDGRISVAGISSQNVNYIAEAIH 282
           QIGMF FTGL P QV+   + +H+Y + +GRIS+AG+++ NV ++A+A +
Sbjct: 353 QIGMFSFTGLTPAQVQFCQERYHLYFSANGRISMAGLNNSNVEHVAQAFN 402


>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +1

Query: 538 SHCFLSSALVSISCTXRAPYSGXLEYMTPDHD 633
           +HCF SS+ +        P+S    Y T  HD
Sbjct: 6   THCFTSSSSLPCYILRHLPFSNFNRYSTASHD 37


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 1/96 (1%)
 Frame = -1

Query: 588 PXRAGDTHQRRTQ-KAMARRRKADGGPDHHDXXXXXXXXXXXXXXXPLATHHRPDRHVLL 412
           P  + D+HQ R+  ++  R R +      H                P ++ H   R    
Sbjct: 133 PHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRRRYE 192

Query: 411 HRTQARAGRASDERVPRVPDERRTHFRRRHLLAKRE 304
            R+ +R+ RA D     + D+ R+H R+R     RE
Sbjct: 193 ERS-SRSSRAHDYDYEDLRDDDRSHERKRSRSRPRE 227


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 587 RXVQEILTNAELKKQWLGDVKQMAD 513
           + +Q  L   +LKKQ+ GD++ +AD
Sbjct: 392 KLMQNELNKGQLKKQFKGDLRNLAD 416


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -2

Query: 350 KDGRISVAGISSQNVNYIAEAI 285
           K+GRI+  G+S+ N++++ E I
Sbjct: 130 KEGRINKIGVSNYNIHHLEEII 151


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 203 EHSIYLKQ*LIKNPNLLKVFVNLF 132
           E  ++L Q L K+PN  K+F NL+
Sbjct: 524 ERVVFLLQELAKSPNTPKLFFNLY 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,472,448
Number of Sequences: 5004
Number of extensions: 45241
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)