Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_D07
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    98   1e-21
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    95   7e-21
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   4.8  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    26   6.4  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    25   8.4  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 98.3 bits (234), Expect = 1e-21
 Identities = 54/123 (43%), Positives = 68/123 (55%)
 Frame = -2

Query: 692 TXIAXRFTPGAFXNPDPXCIXVNXVS*LYWTLHKTINPLXKXHMSTFL*LLLCNTDSPXR 513
           T IA RFTPG F N          +  +          + +        + LC+TDS   
Sbjct: 99  TAIAGRFTPGNFTNYITRTYREPRLI-VVTDPRADAQAIKEASFVNIPVIALCDTDSILN 157

Query: 512 FVDIXIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQ 333
            VDI IP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FYRDPEE E++E+
Sbjct: 158 HVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEE 217

Query: 332 QAK 324
             K
Sbjct: 218 AKK 220



 Score = 35.1 bits (77), Expect = 0.010
 Identities = 16/29 (55%), Positives = 19/29 (65%)
 Frame = -1

Query: 627 EXXFLIVLDPAQDHQPIXEXSYVNIPVIA 541
           E   ++V DP  D Q I E S+VNIPVIA
Sbjct: 120 EPRLIVVTDPRADAQAIKEASFVNIPVIA 148


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 95.5 bits (227), Expect = 7e-21
 Identities = 52/121 (42%), Positives = 67/121 (55%)
 Frame = -2

Query: 692 TXIAXRFTPGAFXNPDPXCIXVNXVS*LYWTLHKTINPLXKXHMSTFL*LLLCNTDSPXR 513
           T IA RFTPG F N          +  +          + +        + LC+TDS   
Sbjct: 100 TAIAGRFTPGNFTNYITRTYREPRLI-IVTDPRADAQAIKEASFVNIPVIALCDTDSILN 158

Query: 512 FVDIXIPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQ 333
            VD+ IP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FYRDPEE E++E+
Sbjct: 159 HVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEE 218

Query: 332 Q 330
           Q
Sbjct: 219 Q 219



 Score = 35.5 bits (78), Expect = 0.008
 Identities = 17/29 (58%), Positives = 19/29 (65%)
 Frame = -1

Query: 627 EXXFLIVLDPAQDHQPIXEXSYVNIPVIA 541
           E   +IV DP  D Q I E S+VNIPVIA
Sbjct: 121 EPRLIIVTDPRADAQAIKEASFVNIPVIA 149


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 467 IGLMWWLLAREVLRLRGVLPRDQRWD 390
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 412 FPVTSAGML--WLICSSTVTLKKVKRM 338
           FP  S  ++  WL   +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 545 LLLCNTDSPXRFVDIXIPCNTKSSHSI 465
           L LC+ +S  RF D+ +  NTK +H I
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFI 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,129
Number of Sequences: 5004
Number of extensions: 44398
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)