Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_D05
         (967 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    32   0.14 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.0  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   9.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   9.1  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 31.9 bits (69), Expect = 0.14
 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
 Frame = +3

Query: 426 PPXPQX-XKPPTXAXXPPXPXTPXTPPA-XPPXXXQTPXXXTXXXXXXXXXXXXXXXXPA 599
           PP PQ   +PPT A  PP P  P   PA  PP   + P   +                 A
Sbjct: 130 PPTPQSELRPPTSA--PPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSA 187

Query: 600 XXPPAPGPXXXPXRXPTPPTRA 665
              P+  P   P   P P ++A
Sbjct: 188 PSLPSAVPPMPPKVPPPPLSQA 209


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 30/130 (23%), Positives = 37/130 (28%), Gaps = 1/130 (0%)
 Frame = +3

Query: 147 PRTTPNAAQHPPGXRXPHXXPRXRS-PXSVPTNAAXXAGXXNPPXPNKNKXXPXPEXDPX 323
           PR+ P+  + PP    P    R  S P + P      +    PP  N ++    P   P 
Sbjct: 366 PRSAPSTGRQPP----PLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPP 421

Query: 324 XCSPXRXHXQRPXXXXXXXXXXXXXXXXXXQSXXPPXPQXXKPPTXAXXPPXPXTPXTPP 503
              P       P                      P  P    PP  A  P  P  P   P
Sbjct: 422 SLPP-----SAPPSLPPSAPPSLPMGAPAAPPLPPSAP--IAPPLPAGMPAAPPLPPAAP 474

Query: 504 AXPPXXXQTP 533
           A PP     P
Sbjct: 475 APPPAPAPAP 484



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 18/77 (23%), Positives = 21/77 (27%), Gaps = 1/77 (1%)
 Frame = +3

Query: 426 PPXPQXXKPPTXAXXPPXPXTPXTPPAXPPXXXQTPXXXTXXXXXXXXXXXXXXXXPAXX 605
           PP     +  T     P    P  PP+ PP    +                     PA  
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM 463

Query: 606 PPAPG-PXXXPXRXPTP 653
           P AP  P   P   P P
Sbjct: 464 PAAPPLPPAAPAPPPAP 480


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
 Frame = +3

Query: 417  SXXPPXPQXXKPP--TXAXXPPXPXTPXTPPAXPPXXXQTP 533
            S  P  PQ   PP  +    PP P +   PP+ PP     P
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPP 1728



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 13/40 (32%), Positives = 14/40 (35%)
 Frame = +3

Query: 414  QSXXPPXPQXXKPPTXAXXPPXPXTPXTPPAXPPXXXQTP 533
            QS  PP      PP      P P +    PA PP     P
Sbjct: 1695 QSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734



 Score = 26.6 bits (56), Expect = 5.2
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = +3

Query: 426  PPXPQXXKPPTXAXXPPXPXTPXTPPAXPPXXXQTP 533
            PP P    PP  A  PP P  P + P  P      P
Sbjct: 1708 PPPPMSVPPPPSA--PPMPAGPPSAPPPPLPASSAP 1741


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 757 HHRKXXPXXPPXXRXHPXRRPP 822
           +H +  P  PP    HP  RPP
Sbjct: 155 NHVRSCPPFPPTQHHHPHTRPP 176


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 18/79 (22%), Positives = 20/79 (25%)
 Frame = +3

Query: 429  PXPQXXKPPTXAXXPPXPXTPXTPPAXPPXXXQTPXXXTXXXXXXXXXXXXXXXXPAXXP 608
            P P    PP  A     P  P      PP     P                    P+  P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPP----VPPPSEAPPVPKPSVGVPPVPPPSTAP 1217

Query: 609  PAPGPXXXPXRXPTPPTRA 665
            P P P       P P  +A
Sbjct: 1218 PVPTPSAGLPPVPVPTAKA 1236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.136    0.472 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,423,118
Number of Sequences: 5004
Number of extensions: 13645
Number of successful extensions: 77
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 495302128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)