Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_D04
         (1060 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical...    31   1.0  
Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    29   5.6  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    29   7.4  

>AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical
           protein Y37A1B.11 protein.
          Length = 691

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +3

Query: 402 TPXXNHTXPXSPXXPXHPTRXTPHXXXTXXPTXPPXPPXXP 524
           +P    T P  P  P  P   TP       PT PP PP  P
Sbjct: 541 SPVREPTPPPPPREPT-PREPTPEPEPVREPTPPPPPPAKP 580


>Z81053-1|CAB02877.1|  385|Caenorhabditis elegans Hypothetical
           protein E02A10.2 protein.
          Length = 385

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -2

Query: 474 GVGXXGXGVXGPGGXGGXCGXXVGFXGXLXXFGC 373
           G G  G G  G GG GG CG   G  G     GC
Sbjct: 145 GGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGC 178


>Z12018-1|CAD88219.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -2

Query: 474 GVGXXGXGVXGPGGXGGXCGXXVGFXGXLXXFGC 373
           G G  G G  G GG GG CG   G  G     GC
Sbjct: 106 GGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGC 139


>Z11126-8|CAD88221.2|  774|Caenorhabditis elegans Hypothetical
           protein ZK643.8 protein.
          Length = 774

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = -2

Query: 474 GVGXXGXGVXGPGGXGGXCGXXVGFXGXLXXFGC 373
           G G  G G  G GG GG CG   G  G     GC
Sbjct: 106 GGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGC 139


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 24/97 (24%), Positives = 30/97 (30%), Gaps = 9/97 (9%)
 Frame = +3

Query: 264 DPXPDPQKTXXHQXKGXXIXPXDTXXP--PXGRGXADP-------RXRTPXATXQTPXXN 416
           DP  DPQ +         + P D   P  P   G  DP          +P     +   +
Sbjct: 182 DPSEDPQPSGSSSP--GPVDPSDEPSPSGPPSPGPVDPSEDPKPSEPPSPGPVDPSDEPS 239

Query: 417 HTXPXSPXXPXHPTRXTPHXXXTXXPTXPPXPPXXPT 527
            + P  P  P  P    P          PP PP  PT
Sbjct: 240 PSDPPGPPGPPGPPTRRPPGPPGPPTRRPPGPPGPPT 276


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 18/67 (26%), Positives = 20/67 (29%)
 Frame = +3

Query: 324 PXDTXXPPXGRGXADPRXRTPXATXQTPXXNHTXPXSPXXPXHPTRXTPHXXXTXXPTXP 503
           P  +  PP  R    P    P      P  +   P  P     P R  PH      PT  
Sbjct: 55  PDPSSPPPAPRPSGQPPG--PQGPSDLPGPSGAPPGPPHPSGPPHRPHPHPSRRPRPTRL 112

Query: 504 PXPPXXP 524
           P P   P
Sbjct: 113 PRPSRSP 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.310    0.131    0.436 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,529,498
Number of Sequences: 27780
Number of extensions: 96250
Number of successful extensions: 274
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2824804260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)