Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_D01
(901 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.64
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.64
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.64
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 31 1.1
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 29 6.0
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 28 7.9
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 7.9
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 7.9
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 28 7.9
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.9 bits (69), Expect = 0.64
Identities = 25/93 (26%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Frame = +3
Query: 624 PXXXSPXXGKTPAGPQKRGXPXXXKPPXPPXTQNTRXPPXXPTRGXXXXXXXQ--XXRAX 797
P SP G P G RG P + R P RG + R
Sbjct: 344 PPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEESSESREE 403
Query: 798 CXXPKRXPPXGXPLXRXXTTHXP---XPPKSXP 887
P+R PP G P T P PP P
Sbjct: 404 PRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSP 436
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/86 (29%), Positives = 27/86 (31%), Gaps = 15/86 (17%)
Frame = +3
Query: 624 PXXXSPXXGKTPAGPQKRGXPXXXKPPXP-PXTQNTRXPPXXPT--------------RG 758
P SP G P G RG P PP P Q + P PT RG
Sbjct: 411 PPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRG 470
Query: 759 XXXXXXXQXXRAXCXXPKRXPPXGXP 836
R P+R PP G P
Sbjct: 471 GPGKSESSESREGPRGPRRSPPTGSP 496
Score = 29.1 bits (62), Expect = 4.5
Identities = 29/102 (28%), Positives = 32/102 (31%)
Frame = +3
Query: 582 PXXXXXXPXXNPXXPXXXSPXXGKTPAGPQKRGXPXXXKPPXPPXTQNTRXPPXXPTRGX 761
P P P P G P P RG P P P Q PP T G
Sbjct: 273 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP---QAGGSPPPAGT-GS 328
Query: 762 XXXXXXQXXRAXCXXPKRXPPXGXPLXRXXTTHXPXPPKSXP 887
Q +A P+R PP G P T PP+ P
Sbjct: 329 PPPPPRQKRQA----PERSPPTGSPPTGSPPT--GRPPRGGP 364
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.9 bits (69), Expect = 0.64
Identities = 25/93 (26%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Frame = +3
Query: 624 PXXXSPXXGKTPAGPQKRGXPXXXKPPXPPXTQNTRXPPXXPTRGXXXXXXXQ--XXRAX 797
P SP G P G RG P + R P RG + R
Sbjct: 365 PPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEESSESREE 424
Query: 798 CXXPKRXPPXGXPLXRXXTTHXP---XPPKSXP 887
P+R PP G P T P PP P
Sbjct: 425 PRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSP 457
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/86 (29%), Positives = 27/86 (31%), Gaps = 15/86 (17%)
Frame = +3
Query: 624 PXXXSPXXGKTPAGPQKRGXPXXXKPPXP-PXTQNTRXPPXXPT--------------RG 758
P SP G P G RG P PP P Q + P PT RG
Sbjct: 432 PPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRG 491
Query: 759 XXXXXXXQXXRAXCXXPKRXPPXGXP 836
R P+R PP G P
Sbjct: 492 GPGKSESSESREGPRGPRRSPPTGSP 517
Score = 29.1 bits (62), Expect = 4.5
Identities = 29/102 (28%), Positives = 32/102 (31%)
Frame = +3
Query: 582 PXXXXXXPXXNPXXPXXXSPXXGKTPAGPQKRGXPXXXKPPXPPXTQNTRXPPXXPTRGX 761
P P P P G P P RG P P P Q PP T G
Sbjct: 294 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP---QAGGSPPPAGT-GS 349
Query: 762 XXXXXXQXXRAXCXXPKRXPPXGXPLXRXXTTHXPXPPKSXP 887
Q +A P+R PP G P T PP+ P
Sbjct: 350 PPPPPRQKRQA----PERSPPTGSPPTGSPPT--GRPPRGGP 385
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.9 bits (69), Expect = 0.64
Identities = 25/93 (26%), Positives = 28/93 (30%), Gaps = 5/93 (5%)
Frame = +3
Query: 624 PXXXSPXXGKTPAGPQKRGXPXXXKPPXPPXTQNTRXPPXXPTRGXXXXXXXQ--XXRAX 797
P SP G P G RG P + R P RG + R
Sbjct: 350 PPTGSPPTGSPPTGRPPRGGPGKSSEESSESREGPRGGPRGGPRGGPRKSSEESSESREE 409
Query: 798 CXXPKRXPPXGXPLXRXXTTHXP---XPPKSXP 887
P+R PP G P T P PP P
Sbjct: 410 PRGPRRSPPTGSPPTGSPPTGRPPRGSPPTGSP 442
Score = 31.1 bits (67), Expect = 1.1
Identities = 25/86 (29%), Positives = 27/86 (31%), Gaps = 15/86 (17%)
Frame = +3
Query: 624 PXXXSPXXGKTPAGPQKRGXPXXXKPPXP-PXTQNTRXPPXXPT--------------RG 758
P SP G P G RG P PP P Q + P PT RG
Sbjct: 417 PPTGSPPTGSPPTGRPPRGSPPTGSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRG 476
Query: 759 XXXXXXXQXXRAXCXXPKRXPPXGXP 836
R P+R PP G P
Sbjct: 477 GPGKSESSESREGPRGPRRSPPTGSP 502
Score = 29.1 bits (62), Expect = 4.5
Identities = 29/102 (28%), Positives = 32/102 (31%)
Frame = +3
Query: 582 PXXXXXXPXXNPXXPXXXSPXXGKTPAGPQKRGXPXXXKPPXPPXTQNTRXPPXXPTRGX 761
P P P P G P P RG P P P Q PP T G
Sbjct: 279 PPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP---QAGGSPPPAGT-GS 334
Query: 762 XXXXXXQXXRAXCXXPKRXPPXGXPLXRXXTTHXPXPPKSXP 887
Q +A P+R PP G P T PP+ P
Sbjct: 335 PPPPPRQKRQA----PERSPPTGSPPTGSPPT--GRPPRGGP 370
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/53 (28%), Positives = 17/53 (32%)
Frame = +3
Query: 555 PXXXXXPXTPXXXXXXPXXNPXXPXXXSPXXGKTPAGPQKRGXPXXXKPPXPP 713
P P TP P P P +TP P+ R P P PP
Sbjct: 141 PPPPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPP 193
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
Frame = +3
Query: 603 PXXNPXXPXXXSPXXGK---TPAGPQKR--GXPXXXKPPXPPXTQNTRXPPXXP 749
P P P SP + TP PQ+R P +P PP T + PP P
Sbjct: 143 PPRVPRTPPPRSPPPRRPPMTPPSPQRRPPRTPPSPEPRNPPRTPPSPIPPPPP 196
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Frame = +3
Query: 657 PAGPQKRGXPXXXKPPXP--PXTQNTRXPPXXPTR 755
P GP P +PP P P T+ PP PTR
Sbjct: 243 PPGPPGPPGPPTRRPPGPPGPPTRRPPGPPGPPTR 277
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 28.3 bits (60), Expect = 7.9
Identities = 29/98 (29%), Positives = 29/98 (29%)
Frame = -2
Query: 900 GXGXXGXS*GGXVGGWXXXXEGXXPLGAPFSGXXXXRGXVXXGXXPPPPWWVXREAXGCF 721
G G G GG GG G G G G G PPPP C
Sbjct: 68 GGGGCGGGGGGCGGGGGCGGGGGGCGGG--GGGCGGGGGCGGGCAPPPP------PPACG 119
Query: 720 GXXGGXGAXPXXGXPAFGAXRGFCRGXEXXXLVGXGXG 607
G GG G G G G C G G G G
Sbjct: 120 GGCGGGGG--GCGGGCGGGGGGGCGGGGGGGCGGGGGG 155
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +3
Query: 603 PXXNPXXPXXXSPXXGKTPAGPQKRGXPXXXKPPXPPXTQNTRXPPXXP 749
P P P P P P G P PP PP PP P
Sbjct: 202 PAGEPGTPAISEPLTPGAPGEPGDSGPPG---PPGPPGAPGNDGPPGPP 247
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +3
Query: 603 PXXNPXXPXXXSPXXGKTPAGPQKRGXPXXXKPPXPPXTQNTRXPPXXP 749
P P P P P P G P PP PP PP P
Sbjct: 197 PAGEPGTPAISEPLTPGAPGEPGDSGPPG---PPGPPGAPGNDGPPGPP 242
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/49 (30%), Positives = 15/49 (30%)
Frame = +3
Query: 603 PXXNPXXPXXXSPXXGKTPAGPQKRGXPXXXKPPXPPXTQNTRXPPXXP 749
P P P P P P G P PP PP PP P
Sbjct: 197 PAGEPGTPAISEPLTPGAPGEPGDSGPPG---PPGPPGAPGNDGPPGPP 242
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/75 (25%), Positives = 21/75 (28%), Gaps = 2/75 (2%)
Frame = +3
Query: 612 NPXXPXXXSPXXGKTPAGPQKRGXPXXXKPPXPPXTQNTRXPPXXPTR--GXXXXXXXQX 785
+P P P P G G PP PP P P + G
Sbjct: 247 SPGGPGPAGPPGPPGPPGQDGSGGAAQPGPPGPPGPPGNDGQPGGPGQPGGPGQDGGPGT 306
Query: 786 XRAXCXXPKRXPPXG 830
A C P R P G
Sbjct: 307 DAAYCPCPPRTPAGG 321
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.314 0.132 0.413
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,036,074
Number of Sequences: 27780
Number of extensions: 162679
Number of successful extensions: 536
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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