Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_C21
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    34   0.025
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    28   1.2  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   5.0  
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    25   8.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    25   8.8  

>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 33.9 bits (74), Expect = 0.025
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 478 FXWEGXAHGLDLHLXAEPTKLQMLQAHYKRDQQRYKSQVKQSILEKYG 335
           F WE    G  +H+ A PT  ++     K  +   +  + QSIL++YG
Sbjct: 282 FAWEAERSGTRVHVVANPTAGELEFRKNKASRMTTQKHIDQSILDRYG 329


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 41   VDNFLSSDTGSTTVFPASPTQYDIFIKE*QHL*PHWPSRQYEPQTVVW 184
            ++NFLS    S+   PA   +Y+   +   +  PHW  +Q E Q  +W
Sbjct: 1192 IENFLSPSFKSS--IPAIAKKYNFEYEYITYNWPHWLRKQEEKQREIW 1237


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 382 QRYKSQVKQSILEKYGGEEHLQSVPREL 299
           Q  +  VK+   EKYG   H+  VP EL
Sbjct: 527 QELEQDVKEECDEKYGKVVHIAVVPNEL 554


>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 405 CSICSLVGSAXRCRSRPCAXP 467
           CS+C+L+G   R R   C  P
Sbjct: 109 CSMCTLIGLCIRVRLERCLPP 129


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +2

Query: 452 AVRPPLPXKXXPXPXLXPVPQNP 520
           A  PP+P K  P P   P P  P
Sbjct: 155 ASAPPIPSKAPPIPSSLPPPAQP 177


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,281,701
Number of Sequences: 5004
Number of extensions: 39113
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)