Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_C21
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157... 86 2e-17
12_02_0381 + 18376045-18376114,18376270-18376420,18376524-183766... 29 4.0
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 29 4.0
07_01_0454 + 3443871-3444024,3444268-3444356,3445482-3445557,344... 29 4.0
04_03_0310 + 14208600-14208784,14209117-14209138 29 4.0
01_06_0864 - 32546696-32546803,32546881-32546961,32547134-325472... 29 4.0
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913... 29 5.2
09_01_0140 + 2083885-2083969,2084178-2084653 29 5.2
03_05_0303 - 22939513-22939598,22940065-22940194,22940753-22941073 29 5.2
>08_01_0189 +
1578935-1578950,1579227-1579390,1579493-1579605,
1579850-1580399,1580514-1580813,1581093-1581133,
1581359-1581606,1581983-1582086,1582177-1582323
Length = 560
Score = 86.2 bits (204), Expect = 2e-17
Identities = 34/47 (72%), Positives = 37/47 (78%)
Frame = -1
Query: 225 LAKSKYEEDALINNHTTVWGSYWRDGQWGYKCCHSFIKMSYCVGEAG 85
L KSKYEED INNHTTVWGS+W+D QWGYKCC I+ SYC G AG
Sbjct: 409 LPKSKYEEDVFINNHTTVWGSWWKDHQWGYKCCKQTIRNSYCTGLAG 455
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = -3
Query: 472 WEGXAHGLDLHLXAEPTKLQMLQAHYKRDQQRYKSQVKQSILEKYGGEEHLQSVPRELLL 293
WE G D+H+ A P++ ++L +K +++ KS+ K I+EKYG + +PRELLL
Sbjct: 303 WEAFDKGQDIHMQAAPSQAELLFKSFKIKKEKLKSENKDKIMEKYGNAASEEPIPRELLL 362
Query: 292 AQTEVFTRY-KQGR 254
Q+E Y + GR
Sbjct: 363 GQSEKEIEYDRTGR 376
>12_02_0381 +
18376045-18376114,18376270-18376420,18376524-18376681,
18378680-18378945,18379025-18379243,18379309-18379417,
18379488-18379603,18379935-18380033,18381447-18381556,
18382928-18383006,18383127-18383273,18383363-18383443,
18383529-18383648,18383902-18384024,18384276-18384353,
18384459-18384547,18384653-18384761,18385018-18385086,
18385200-18385310,18385657-18385712,18385808-18385985,
18386065-18386166,18386243-18386314,18386489-18386554,
18386674-18386739,18386853-18386936,18387080-18387196,
18388077-18388163,18389321-18389341
Length = 1050
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 397 YKRDQQRY-KSQVKQSILEKYGGEEHLQSV 311
YK D +R K K+++ E+YGGEE L +
Sbjct: 434 YKFDDERVTKEDTKKALEEQYGGEEELPQI 463
>11_06_0151 -
20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 397 YKRDQQRY-KSQVKQSILEKYGGEEHLQSV 311
YK D +R K K+++ E+YGGEE L +
Sbjct: 448 YKFDDERVTKEDTKKALEEQYGGEEELPQI 477
>07_01_0454 +
3443871-3444024,3444268-3444356,3445482-3445557,
3445875-3445880,3445984-3446131,3446237-3446394,
3446473-3446676,3446803-3447038,3447227-3447439,
3447984-3448082,3448262-3448371,3448581-3448655,
3449407-3449485,3449563-3449709,3449785-3449865,
3449975-3450094,3450580-3450702,3451382-3451459,
3451586-3451674,3451760-3451868,3452117-3452227,
3452557-3452612,3452697-3452874,3452971-3453072,
3453160-3453231,3453350-3453415,3453502-3453567,
3453676-3453759,3454638-3454754,3455753-3455827,
3455912-3455995,3456138-3456179
Length = 1148
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 466 GXAHGLDLHLXAEPTKLQMLQAHYKRDQQRY-KSQVKQSILEKYGGEEHL 320
G HG + PT + +K D +R K K+++ E+YGGEE L
Sbjct: 504 GGVHGGHYYAFIRPT---LSDQWFKFDDERVTKEDAKRALEEQYGGEEEL 550
>04_03_0310 + 14208600-14208784,14209117-14209138
Length = 68
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 324 TSSPYPGSCCWPRPKCSPATNRDG 253
T +P G CC P P SPA RDG
Sbjct: 37 TGAPGTGGCCSP-PPISPARGRDG 59
>01_06_0864 -
32546696-32546803,32546881-32546961,32547134-32547250,
32548264-32548338,32548618-32548680,32549122-32549187,
32549254-32549325,32549403-32549504,32549588-32549765,
32549871-32549926,32551578-32551688,32551797-32551865,
32551960-32552068,32552176-32552327,32552398-32552475,
32554257-32554379,32555527-32555646,32555729-32555809,
32555881-32556027,32556112-32556190,32557223-32557297,
32558004-32558113,32558984-32559082,32559700-32559815,
32559914-32560022,32560098-32560229,32560389-32560591,
32561428-32561585,32561668-32561797,32562529-32562607,
32562806-32562829
Length = 1073
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = -3
Query: 466 GXAHGLDLHLXAEPTKLQMLQAHYKRDQQRY-KSQVKQSILEKYGGEEHL 320
G HG + P + YK D +R K +K+++ E+YGGEE L
Sbjct: 393 GGGHGGHYYAFIRPA---LSDIWYKFDDERVTKEDMKRALEEQYGGEEEL 439
>10_08_0198 +
15688142-15690427,15690524-15690607,15691232-15691336,
15691420-15691528,15693037-15693188,15693278-15693583
Length = 1013
Score = 28.7 bits (61), Expect = 5.2
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 326 APPVRTQGAAAGPDRSVHPLQTGTARSSAGQRSNLP 219
A P T AAGP+ S+H QTG S G +N P
Sbjct: 582 AGPSFTSSVAAGPNHSIHLNQTG---SGLGSPANAP 614
>09_01_0140 + 2083885-2083969,2084178-2084653
Length = 186
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -2
Query: 311 TQGAAAGPDRSVHPLQTGTAR--SSAGQRSNLPRVNMKR 201
T+ A AGP R HP G R ++AG+RS+ R+N R
Sbjct: 94 TEEAVAGPRRRQHPAPMGARRAVTNAGRRSS-HRLNTSR 131
>03_05_0303 - 22939513-22939598,22940065-22940194,22940753-22941073
Length = 178
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 250 RAVPVCSG*TLRSGPAAAPWVRTGGAPHLHT 342
RA G LR G + APW R A + HT
Sbjct: 7 RAAAAAVGEALRRGASTAPWRRAASASYHHT 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,781,465
Number of Sequences: 37544
Number of extensions: 332095
Number of successful extensions: 1125
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -