Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_C19
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    37   0.003
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.11 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.77 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.0  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   1.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.3  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 32/122 (26%), Positives = 38/122 (31%), Gaps = 8/122 (6%)
 Frame = +2

Query: 434 RXXSSGXXXLVP-GFSXXPXPPPXXXPX----PXPXGXXRLFAXPPGGXXXXXRXGXXGX 598
           R  ++G   L P G S  P PPP   P     P P    R  + PP              
Sbjct: 344 RSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPAL 403

Query: 599 PXAAXRTXXXLXXFSXPXSLGXRXSGXXPP--PPXXGWXPPXPXP-PPXXPXLSPXPXXL 769
           P     +         P SL        PP  PP      P   P PP  P   P P  +
Sbjct: 404 PPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGM 463

Query: 770 PS 775
           P+
Sbjct: 464 PA 465



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
 Frame = +3

Query: 486 PGLPPPXGLXPX-PGGXXXXSPXPXAAXXXPPAXA 587
           P LPP   + P  P G     P P AA   PPA A
Sbjct: 447 PPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPA 481



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 25/93 (26%), Positives = 27/93 (29%)
 Frame = +2

Query: 476 SXXPXPPPXXXPXPXPXGXXRLFAXPPGGXXXXXRXGXXGXPXAAXRTXXXLXXFSXPXS 655
           S  P PPP       P       A PP G            P +   +       S P S
Sbjct: 386 SNPPAPPPAIPGRSAP-------ALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPS 438

Query: 656 LGXRXSGXXPPPPXXGWXPPXPXPPPXXPXLSP 754
           L        P PP     PP P   P  P L P
Sbjct: 439 LPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPP 471


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 683 PPPPXXGWXPPXPXPPPXXP 742
           PPPP  G+ PP   PPP  P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = +2

Query: 683 PPPPXXGWXPPXPXPPPXXPXLSPXPXXLP 772
           PP P  G  PP P PPP      P P   P
Sbjct: 753 PPAPIMG-GPPPPPPPPGVAGAGPPPPPPP 781



 Score = 28.3 bits (60), Expect = 1.3
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 674 GXXPPPPXXGWXPPXPXPPPXXP 742
           G  PPPP  G     P PPP  P
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 4/24 (16%)
 Frame = +2

Query: 674 GXXPPPP----XXGWXPPXPXPPP 733
           G  PPPP      G  PP P PPP
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPP 782



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 683 PPPPXXGWXPPXPXPPPXXPXLS 751
           PPPP      P P PPP  P +S
Sbjct: 765 PPPPGVAGAGPPPPPPP-PPAVS 786


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +2

Query: 671  SGXXPPPPXXGWXPPXPXPP-PXXPXLSPXP 760
            S   PPPP     PP   PP P  P  +P P
Sbjct: 1703 SAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +3

Query: 492  LPPPXGLXPXPGGXXXXSPXPXAAXXXPPAXAXG 593
            +PPP    P P G     P P  A   P     G
Sbjct: 1714 VPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 1/61 (1%)
 Frame = +3

Query: 435  VRXPPXXXXLFPVFXXXPGLPPPXGLXPXPGGXXXXSPXPXAAXXXPPAXA-XGXXXXPX 611
            V  P       P     P +P P G+ P P       P P  +   PP  A  G    P 
Sbjct: 1066 VPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPK 1125

Query: 612  P 614
            P
Sbjct: 1126 P 1126



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/43 (27%), Positives = 14/43 (32%)
 Frame = +3

Query: 486  PGLPPPXGLXPXPGGXXXXSPXPXAAXXXPPAXAXGXXXXPXP 614
            P +P P G  P P       P P  +   PP         P P
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP 1192


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/41 (34%), Positives = 14/41 (34%)
 Frame = -1

Query: 607 GXXXXPXAXAGGXXXAAXGXGEXXXXPPGXGXRPXGGGRPG 485
           G    P    GG      G G     P G G  P G G PG
Sbjct: 232 GFEGGPGGFGGGPGGFGGGLGGFGGGPGGFGGGPGGHGGPG 272



 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -2

Query: 771 GRXXGXGDXXGXXGGGXGXGGXXPXXGGGG 682
           G   G G   G  GGG G  G  P   GGG
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGGPGGFGGG 264


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,505,471
Number of Sequences: 5004
Number of extensions: 17880
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)