Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_C18
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical...    29   3.9  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   3.9  
AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like pro...    29   3.9  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   5.1  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical
           protein Y113G7B.23 protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 638 PPPXKKKXXFFXSPPPPXKXXXXXXKXPPXXKKXP 534
           PPP  +   ++  PPPP +        PP  ++ P
Sbjct: 680 PPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPP 714


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -3

Query: 638 PPPXKKKXXFFXSPPPPXKXXXXXXKXPPXXKKXPPPPXF 519
           PPP +++   F +PPPP          P   +   PP  F
Sbjct: 254 PPPPQQQQQQFQAPPPPMASHSSISSTPVQQQGFAPPQQF 293


>AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like
           protein protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 638 PPPXKKKXXFFXSPPPPXKXXXXXXKXPPXXKKXP 534
           PPP  +   ++  PPPP +        PP  ++ P
Sbjct: 680 PPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPP 714


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = -3

Query: 638 PPPXKKKXXFFXSPPPPXKXXXXXXKXPPXXKKXPPPP 525
           PPP          PPPP          PP   + P PP
Sbjct: 274 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP 311



 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = -3

Query: 638 PPPXKKKXXFFXSPPPPXKXXXXXXKXPPXXKKXPPPP 525
           PPP  +       PPPP          PP     PP P
Sbjct: 337 PPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAP 374


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = -3

Query: 638 PPPXKKKXXFFXSPPPPXKXXXXXXKXPPXXKKXPPPP 525
           PPP          PPPP          PP   + P PP
Sbjct: 284 PPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP 321



 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = -3

Query: 638 PPPXKKKXXFFXSPPPPXKXXXXXXKXPPXXKKXPPPP 525
           PPP  +       PPPP          PP     PP P
Sbjct: 347 PPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAP 384


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -1

Query: 598 PPPPXKXXXXXXXXPPFXKKXPPPPXFF 515
           PPPP          PP     PPPP  F
Sbjct: 84  PPPPPMFAGGIPPPPPMMGGIPPPPPMF 111



 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = -3

Query: 599 PPPPXKXXXXXXKXPPXXKKXPPPPXFF 516
           PPPP          PP     PPPP  F
Sbjct: 84  PPPPPMFAGGIPPPPPMMGGIPPPPPMF 111


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/38 (31%), Positives = 13/38 (34%)
 Frame = -3

Query: 638 PPPXKKKXXFFXSPPPPXKXXXXXXKXPPXXKKXPPPP 525
           P P   +      PPPP          PP     PPPP
Sbjct: 485 PSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPPP 522


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,399,138
Number of Sequences: 27780
Number of extensions: 159918
Number of successful extensions: 407
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)