Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_C16
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    29   0.58 
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    27   3.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.4  

>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 331 PPNADLSKPPDPERWLPKYERT 266
           P + +    PDP+RW+PK +RT
Sbjct: 524 PKSFNPKATPDPQRWIPKRDRT 545


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 207 DIPWLPLMTSRLMPRRFLYAVRSYFGNHLSGSGG 308
           D+PW P   SR+  +    A RS FG +++   G
Sbjct: 140 DLPWTPTQLSRIARQGSGSACRSLFGGYVAWEMG 173


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/47 (34%), Positives = 17/47 (36%)
 Frame = -3

Query: 789 GXXGGGXXXXXGPXXXXGXXXXFTXRVXAGXXXXXPGXXGGGPGXAG 649
           G  GG      GP    G    F   +  G     PG  GGGPG  G
Sbjct: 225 GFGGGPGGFEGGPGGFGGGPGGFGGGL--GGFGGGPGGFGGGPGGHG 269



 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -3

Query: 702 GXXXXXPGXXGGGPGXAGAXXKXXFXGXGG 613
           G     PG  GGGPG  G        G GG
Sbjct: 231 GGFEGGPGGFGGGPGGFGGGLGGFGGGPGG 260


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,323
Number of Sequences: 5004
Number of extensions: 34454
Number of successful extensions: 105
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)