Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_C13
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...   113   2e-26
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...   111   1e-25
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    81   1e-16
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    26   5.0  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    26   6.6  
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc...    25   8.7  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    25   8.7  
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo...    25   8.7  

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score =  113 bits (273), Expect = 2e-26
 Identities = 55/109 (50%), Positives = 72/109 (66%)
 Frame = -2

Query: 562 TXDKGXXSKEEXERMVNEAEKYRNEDDKQKETXQAKNALESYXFSMKXTMXXXXXXXKXX 383
           T DKG  SKEE +RMV+EAEKY+ ED+ +    QAKN LESY +S++ ++       K  
Sbjct: 502 TNDKGRLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSLRNSLDDPNLKDKVD 561

Query: 382 XXDKQTILDKCXDTIKWLDSNQLADKEEYEHKQKELEGICNPIITKMYQ 236
             DK+ I     +TI+WLD N  A K+EYE KQKELEG+ NPI+ K+YQ
Sbjct: 562 ASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQ 610


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score =  111 bits (267), Expect = 1e-25
 Identities = 54/109 (49%), Positives = 72/109 (66%)
 Frame = -2

Query: 562 TXDKGXXSKEEXERMVNEAEKYRNEDDKQKETXQAKNALESYXFSMKXTMXXXXXXXKXX 383
           T DKG  SKEE +RMV EAEKY+ ED+ +    QAKN LESY +S++ ++       K  
Sbjct: 502 TNDKGRLSKEEIDRMVAEAEKYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPNLKDKVD 561

Query: 382 XXDKQTILDKCXDTIKWLDSNQLADKEEYEHKQKELEGICNPIITKMYQ 236
             DK+T+     +TI+WLDSN  A K+E+E KQKELE + NPI+ K+YQ
Sbjct: 562 ASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIYQ 610


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 81.4 bits (192), Expect = 1e-16
 Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
 Frame = -2

Query: 634 ANGIXXGFPXXEKSXXXGXTRSPXTXDKGXXSKEEXERMVNEAEKYRNEDDKQKETXQAK 455
           ANG+       +KS      +     DKG  S+E+ ERMV EAE++  ED   KE  +A+
Sbjct: 509 ANGVLT-VSAVDKSGKGKPEKLVIKNDKGRLSEEDIERMVKEAEEFAEEDKILKERIEAR 567

Query: 454 NALESYXFSMKXTM-XXXXXXXKXXXXDKQTILDKCXDTIKWLD-SNQLADKEEYEHKQK 281
           N LE+Y +S+K           K    DKQ +LD   D  +WL+   + A KEE+E +++
Sbjct: 568 NTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQ 627

Query: 280 ELEGICNPIITKMY 239
           +L+ + +PI  K+Y
Sbjct: 628 KLDAVVHPITQKLY 641


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 228 EESPEVCRASRAEHPEPE 175
           EE+P    AS  EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
 Frame = -2

Query: 571 SPXTXDKGXXSKEEXERMVNEAEK---YRNEDDKQ 476
           SP   D     KE+  R  NEA+K   YR E + Q
Sbjct: 459 SPTVSDSASNEKEQEHRAQNEAQKEEEYRAESEAQ 493


>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 538 KEEXERMVNEAEKYRNEDDKQKETXQAKNALE 443
           +EE E+ + E  K R + DK++E  + +  LE
Sbjct: 694 REEEEKRILEERKRREKLDKEEEERRRRELLE 725


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +1

Query: 217 RGLLRHPGTSSLLSDCKCLPILSA-CAH 297
           R ++ H GT  +  D  CLP  SA C H
Sbjct: 122 REVVHHEGTCEICYDEGCLPFFSAECDH 149


>SPBC16A3.11 |eso1||sister chromatid cohesion protein
           Eso1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 520 MVNEAEKYRNEDDKQKETXQAKNALESYXFSMKXT 416
           M+++    RN+ +KQ  T   KNA++ Y  S+K T
Sbjct: 247 MLSKLVSSRNKPNKQ--TILTKNAIQDYLVSLKIT 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,823,180
Number of Sequences: 5004
Number of extensions: 29913
Number of successful extensions: 119
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)