Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_C09
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    33   0.036
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   5.4  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   7.2  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 33.5 bits (73), Expect = 0.036
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +3

Query: 657  PXXPXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAP 785
            P     P ++     P     PPP +  P P  PPS   PP P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736



 Score = 31.5 bits (68), Expect = 0.14
 Identities = 14/44 (31%), Positives = 16/44 (36%)
 Frame = +3

Query: 666  PXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAPXXPP 797
            P  P  A           PPP +  P P  PP    PP+   PP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 723 PPXAXXPXPXXPPSXXXPPAPXXPPA 800
           PP A  P    P     PP P  PPA
Sbjct: 173 PPSAAAPATSLPSDYNPPPPPPPPPA 198


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 720 PPPXAXXPXPXXPPSXXXPPAP 785
           PPP    P P   P    PPAP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAP 756



 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/52 (28%), Positives = 16/52 (30%), Gaps = 4/52 (7%)
 Frame = +3

Query: 657 PXXPXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPP----SXXXPPAPXXPPA 800
           P  P    +      P     P P    P P  PP        PP P  PPA
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 322 LRSLISNLSNTCDLTPLPEWSCEQSAW 242
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,136,431
Number of Sequences: 5004
Number of extensions: 12138
Number of successful extensions: 62
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)