Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_C09
(800 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.42
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.42
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.42
Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical pr... 31 0.73
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 31 0.73
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 31 0.73
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 31 0.96
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 31 0.96
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 0.96
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 0.96
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 0.96
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 31 0.96
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 31 1.3
AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen prot... 31 1.3
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 3.9
U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (gr... 29 3.9
U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical pr... 29 5.1
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 6.8
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 28 6.8
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 28 6.8
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 6.8
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 28 6.8
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 8.9
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 28 8.9
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 28 8.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 8.9
AF326941-1|AAG49391.1| 139|Caenorhabditis elegans 5H1 protein. 28 8.9
AF125955-7|AAD14713.1| 139|Caenorhabditis elegans Hypothetical ... 28 8.9
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/60 (28%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Frame = +3
Query: 621 PXSPXXXSXXXXPXXPXX-PXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAPXXPP 797
P P P P P + P PP + P P PP PP P PP
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +3
Query: 657 PXXPXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAPXXPP 797
P P P PP P P PP PP P PP
Sbjct: 731 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/47 (27%), Positives = 15/47 (31%)
Frame = +3
Query: 657 PXXPXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAPXXPP 797
P P P + P PP P P PP P + PP
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/60 (28%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Frame = +3
Query: 621 PXSPXXXSXXXXPXXPXX-PXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAPXXPP 797
P P P P P + P PP + P P PP PP P PP
Sbjct: 717 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +3
Query: 657 PXXPXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAPXXPP 797
P P P PP P P PP PP P PP
Sbjct: 731 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 777
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/47 (27%), Positives = 15/47 (31%)
Frame = +3
Query: 657 PXXPXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAPXXPP 797
P P P + P PP P P PP P + PP
Sbjct: 714 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 760
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.3 bits (70), Expect = 0.42
Identities = 17/60 (28%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Frame = +3
Query: 621 PXSPXXXSXXXXPXXPXX-PXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAPXXPP 797
P P P P P + P PP + P P PP PP P PP
Sbjct: 300 PGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/47 (29%), Positives = 14/47 (29%)
Frame = +3
Query: 657 PXXPXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAPXXPP 797
P P P PP P P PP PP P PP
Sbjct: 314 PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPP 360
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/47 (27%), Positives = 15/47 (31%)
Frame = +3
Query: 657 PXXPXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAPXXPP 797
P P P + P PP P P PP P + PP
Sbjct: 297 PPPPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPP 343
>Z67990-1|CAA91932.1| 316|Caenorhabditis elegans Hypothetical
protein F02D10.1 protein.
Length = 316
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -2
Query: 799 AGGXXGAGGXXXXGGXXGXGXXAXGGG 719
AGG G GG GG G G A GGG
Sbjct: 84 AGGAGGGGGYGAGGGGGGGGGEAAGGG 110
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.5 bits (68), Expect = 0.73
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXGXXXXEXXXGXXG 620
GG G GG GG G G GGG G G G G G G
Sbjct: 95 GGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSG 153
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXG 701
GG G GG GG G G GGG G
Sbjct: 88 GGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGG 119
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/59 (28%), Positives = 18/59 (30%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXGXXXXEXXXGXXG 620
GG G GG GG G G GG G + G G G G G
Sbjct: 114 GGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCG 172
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/59 (28%), Positives = 18/59 (30%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXGXXXXEXXXGXXG 620
GG G GG GG G G + GG G G G G G G
Sbjct: 122 GGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGG 180
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXGXXXXEXXXGXXG 620
G G GG GG G G GGG G G G G G G
Sbjct: 82 GCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCG 140
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXGXXXXEXXXGXXG 620
G G GG GG G G GGG G G G G G G
Sbjct: 102 GCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGG 160
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXG 656
GG G G GG G G GGG G + G G G
Sbjct: 149 GGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGG 195
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 31.5 bits (68), Expect = 0.73
Identities = 18/59 (30%), Positives = 18/59 (30%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXGXXXXEXXXGXXG 620
GG G GG GG G G GGG G G G G G G
Sbjct: 95 GGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSG 153
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXG 701
GG G GG GG G G GGG G
Sbjct: 88 GGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGG 119
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/59 (28%), Positives = 18/59 (30%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXGXXXXEXXXGXXG 620
GG G GG GG G G GG G + G G G G G
Sbjct: 114 GGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCG 172
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/59 (28%), Positives = 18/59 (30%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXGXXXXEXXXGXXG 620
GG G GG GG G G + GG G G G G G G
Sbjct: 122 GGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGG 180
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXGXXXXEXXXGXXG 620
G G GG GG G G GGG G G G G G G
Sbjct: 82 GCGGGGGGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCG 140
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/59 (28%), Positives = 17/59 (28%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXGXXXXEXXXGXXG 620
G G GG GG G G GGG G G G G G G
Sbjct: 102 GCGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGSSGGCGGGSSGGCGGGGG 160
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/47 (31%), Positives = 16/47 (34%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXG 656
GG G G GG G G GGG G + G G G
Sbjct: 149 GGSSGGCGGGGGGGCGGGGGGGCGGGSSGGGGYAVAPSGGGGCGGGG 195
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 31.1 bits (67), Expect = 0.96
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXG 656
GG G GG GG G G GGG G G G G
Sbjct: 119 GGGCGGGGGGCGGGCGGGGGGGCGGGGGGGCGGGGGGCGGGGGGCGG 165
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXG 701
GG G GG GG G G GGG G
Sbjct: 70 GGCGGGGGGCGGGGGCGGGGGGCGGGGGGCGG 101
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXG 701
GG G GG GG G G GGG G
Sbjct: 77 GGCGGGGGCGGGGGGCGGGGGGCGGGGGCGGG 108
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/46 (32%), Positives = 15/46 (32%)
Frame = -2
Query: 793 GXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXG 656
G G GG GG G G GGG G G G G
Sbjct: 142 GGGGGGGCGGGGGGCGGGGGGCGGGGGGCGGGGGGGCGGGGGGGCG 187
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 31.1 bits (67), Expect = 0.96
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXG 656
GG G GG GG G G GGG G G G G
Sbjct: 87 GGGCGGGGCGGGGGGCGGGGGCGGGGGGGCGGGGGGGCGGGGGGGGG 133
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXG 665
GG G GG GG G G GG G A G G
Sbjct: 99 GGGCGGGGGCGGGGGGGCGGGGGGGCGGGGGGGGGGYASGGSGG 142
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.1 bits (67), Expect = 0.96
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +3
Query: 666 PXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAPXXPP 797
P P P PPP A P P PP P PP
Sbjct: 272 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 315
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/55 (29%), Positives = 17/55 (30%)
Frame = +3
Query: 621 PXSPXXXSXXXXPXXPXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAP 785
P P P P A P PPP P P PP+ PP P
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPP--PPAGGSPPPP 292
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.1 bits (67), Expect = 0.96
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +3
Query: 666 PXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAPXXPP 797
P P P PPP A P P PP P PP
Sbjct: 293 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 336
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/55 (29%), Positives = 17/55 (30%)
Frame = +3
Query: 621 PXSPXXXSXXXXPXXPXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAP 785
P P P P A P PPP P P PP+ PP P
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPP--PPAGGSPPPP 313
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.1 bits (67), Expect = 0.96
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +3
Query: 666 PXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAPXXPP 797
P P P PPP A P P PP P PP
Sbjct: 278 PPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 321
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/55 (29%), Positives = 17/55 (30%)
Frame = +3
Query: 621 PXSPXXXSXXXXPXXPXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAP 785
P P P P A P PPP P P PP+ PP P
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPP--PPAGGSPPPP 298
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 31.1 bits (67), Expect = 0.96
Identities = 20/73 (27%), Positives = 20/73 (27%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXGXXXXEXXXGXXGP 617
GG GG GG G G GGG G G G G G GP
Sbjct: 166 GGGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGGYGGGGDGGYGP 225
Query: 616 XXXXXXGXXXXXG 578
G G
Sbjct: 226 SGGYGGGYGPGGG 238
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +3
Query: 702 PXXXXXPPPXAXXPXPXXPPSXXXPPAPXXP 794
P PPP P P PP PP P P
Sbjct: 52 PPQFCPPPPMCPPPPPPPPPPMCPPPPPPMP 82
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +3
Query: 702 PXXXXXPPPXAXXPXPXXPPSXXXPPAPXXPP 797
P PPP P P PP PP PP
Sbjct: 34 PPPMCAPPPLPCPPPPICPPQFCPPPPMCPPP 65
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +3
Query: 666 PXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAPXXPP 797
P P P PPP P PP PP P PP
Sbjct: 28 PPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPP 71
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 1/48 (2%)
Frame = +3
Query: 657 PXXPXXPXLAXXXXXPXXXXXP-PPXAXXPXPXXPPSXXXPPAPXXPP 797
P P P + P PP P P PP PP P PP
Sbjct: 29 PCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPP 76
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +3
Query: 720 PPPXAXXPXPXXPPSXXXPPAPXXPPA 800
PPP P P PP PP P P+
Sbjct: 57 PPPPMCPPPPPPPPPPMCPPPPPPMPS 83
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/59 (28%), Positives = 19/59 (32%)
Frame = +3
Query: 621 PXSPXXXSXXXXPXXPXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAPXXPP 797
P P + P P P + P PPP P P PP PP P P
Sbjct: 32 PPPPPMCAPPPLPCPP--PPICPPQFCPPPPMCPPPPPPPPPPMCPP--PPPPMPSYSP 86
>AF000198-8|AAP68908.1| 435|Caenorhabditis elegans Collagen protein
51 protein.
Length = 435
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -2
Query: 799 AGGXXGAGGXXXXGGXXGXGXXAXGG 722
AGG GAGG GG G G A GG
Sbjct: 351 AGGAGGAGGYSGGGGGGGGGAAAGGG 376
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 799 AGGXXGAGGXXXXGGXXGXGXXAXGGG 719
AGG G GG G G G A GGG
Sbjct: 357 AGGYSGGGGGGGGGAAAGGGYNAGGGG 383
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/26 (42%), Positives = 11/26 (42%)
Frame = +3
Query: 720 PPPXAXXPXPXXPPSXXXPPAPXXPP 797
P P P P PP PP P PP
Sbjct: 125 PAPYQQQPPPPPPPPHYPPPPPHYPP 150
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/58 (25%), Positives = 16/58 (27%)
Frame = +3
Query: 621 PXSPXXXSXXXXPXXPXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAPXXP 794
P +P P P P P PP P PP PP P P
Sbjct: 98 PPAPYPQHAVPAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPPPAP 155
>U39852-7|AAK39260.1| 240|Caenorhabditis elegans Ground-like (grd
related) protein 6 protein.
Length = 240
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/43 (30%), Positives = 13/43 (30%)
Frame = +3
Query: 657 PXXPXXPXLAXXXXXPXXXXXPPPXAXXPXPXXPPSXXXPPAP 785
P P P P PPP P P PP P P
Sbjct: 52 PVCPPPPPCPAQFCPPPPICPPPPPPPMPCPPPPPPMPRPSCP 94
>U58755-7|AAB00696.1| 136|Caenorhabditis elegans Hypothetical
protein C34D4.11 protein.
Length = 136
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/47 (36%), Positives = 17/47 (36%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXG 656
GG G GG GG G G GGG G R G G G
Sbjct: 86 GGGNGGGG---RGGGGGGGGGRGGGGGGRGGGGGGGGGRGGGGGGRG 129
Score = 28.7 bits (61), Expect = 5.1
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXG 701
GG G GG GG G G GGG G
Sbjct: 101 GGGRGGGGGGRGGGGGGGGGRGGGGGGRGGGG 132
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = -2
Query: 799 AGGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXG 656
A G G GG GG G G GGG G G G G
Sbjct: 240 AYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQG 287
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = -2
Query: 796 GGXXGAGGXXXXGGXXGXGXXAXGGG 719
GG G GG GG G G GGG
Sbjct: 245 GGWGGGGGGRGYGGGGGGGGYGYGGG 270
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = -2
Query: 799 AGGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXG 656
A G G GG GG G G GGG G G G G
Sbjct: 202 AYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQG 249
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/48 (33%), Positives = 16/48 (33%)
Frame = -2
Query: 799 AGGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXG 656
A G G GG GG G G GGG G G G G
Sbjct: 240 AYGGPGGGGQGGYGGDYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQG 287
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/28 (39%), Positives = 11/28 (39%)
Frame = +3
Query: 702 PXXXXXPPPXAXXPXPXXPPSXXXPPAP 785
P PPP P P PP PP P
Sbjct: 1586 PPLMGGPPPRLGMPPPGPPPPNGGPPPP 1613
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 27.9 bits (59), Expect = 8.9
Identities = 16/60 (26%), Positives = 18/60 (30%)
Frame = -2
Query: 799 AGGXXGAGGXXXXGGXXGXGXXAXGGGXXXXXGXXXXXARXGXXGXXGXXXXEXXXGXXG 620
+GG G G GG G G G G G + G G G G G
Sbjct: 63 SGGGRGGGSGGGRGGSGGAGAGGSGSGSGGWGGQDGGSSAGGWGGSQGGSQGGSSGGWGG 122
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Frame = +3
Query: 702 PXXXXXPPPXAXXPXPXXPPSXXX-PPAPXXPP 797
P PP P P PPS PP P PP
Sbjct: 272 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 304
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 27.9 bits (59), Expect = 8.9
Identities = 20/95 (21%), Positives = 20/95 (21%)
Frame = +3
Query: 513 PGXXPAXXXXXXXXXPXXXXXXPXXXXXPXXXXXXGPXSPXXXSXXXXPXXPXXPXLAXX 692
PG P P P P G P P P A
Sbjct: 145 PGPPPKPPCQKCPPGPPGPAGPPGPKGLPGPQGDAGTSGQDGVPGLPGPPGPSGPQGAPG 204
Query: 693 XXXPXXXXXPPPXAXXPXPXXPPSXXXPPAPXXPP 797
P P PP PP P PP
Sbjct: 205 VPGEKGPTGEPGKVINGAPPGPPGPPGPPGPQGPP 239
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/80 (26%), Positives = 21/80 (26%)
Frame = +3
Query: 558 PXXXXXXPXXXXXPXXXXXXGPXSPXXXSXXXXPXXPXXPXLAXXXXXPXXXXXPPPXAX 737
P P P GP P S P P P P P P
Sbjct: 176 PSPGPVDPSEDPQPSGSSSPGPVDP---SDEPSPSGPPSPGPVDPSEDPKPSEPPSPGPV 232
Query: 738 XPXPXXPPSXXXPPAPXXPP 797
P PS PP P PP
Sbjct: 233 DPSDEPSPSD--PPGPPGPP 250
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/77 (27%), Positives = 22/77 (28%), Gaps = 4/77 (5%)
Frame = +3
Query: 579 PXXXXXPXXXXXXGPXSPXXXSXXXXPXXPXX--PXLAXXXXXPXXXXXPP--PXAXXPX 746
P P GP P P P P P PP P P
Sbjct: 200 PSDEPSPSGPPSPGPVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPPTRRPPG 259
Query: 747 PXXPPSXXXPPAPXXPP 797
P PP+ PP P PP
Sbjct: 260 PPGPPT-RRPPGPPGPP 275
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/33 (39%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Frame = +3
Query: 702 PXXXXXPPPXAXXPXPXXPPSXXX-PPAPXXPP 797
P PP P P PPS PP P PP
Sbjct: 282 PMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 314
>AF326941-1|AAG49391.1| 139|Caenorhabditis elegans 5H1 protein.
Length = 139
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/60 (30%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Frame = -2
Query: 793 GXXGAGGXXXXGGXXGXGXXAX-GGGXXXXXGXXXXXARXGXXGXXGXXXXEXXXGXXGP 617
G G GG GG G GGG G R G G G G GP
Sbjct: 61 GGPGLGGPGVGGGPGAFGPYGRYGGGGYGGYGRYGRYGRYGGYGGYGGYGGPGYGGGPGP 120
>AF125955-7|AAD14713.1| 139|Caenorhabditis elegans Hypothetical
protein F46E10.2 protein.
Length = 139
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/60 (30%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Frame = -2
Query: 793 GXXGAGGXXXXGGXXGXGXXAX-GGGXXXXXGXXXXXARXGXXGXXGXXXXEXXXGXXGP 617
G G GG GG G GGG G R G G G G GP
Sbjct: 61 GGPGLGGPGVGGGPGAFGPYGRYGGGGYGGYGRYGRYGRYGGYGGYGGYGGPGYGGGPGP 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,104,495
Number of Sequences: 27780
Number of extensions: 108312
Number of successful extensions: 1582
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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