Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_C07
(934 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 36 0.006
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.18
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.23
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.71
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 36.3 bits (80), Expect = 0.006
Identities = 37/163 (22%), Positives = 43/163 (26%), Gaps = 2/163 (1%)
Frame = +3
Query: 447 PRPXNGAXNHRQXEPGXPPXXGGPGX-SXKGXG*XAPRPXPXXGGPTSEXXXXXXXXXXX 623
P NG+ N P PP G G AP P P P++
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRA 384
Query: 624 XXTXXKPXPXTKIRGAAXPPXXHQXTXXXTXXLXXEPQTTPRNTXGHPXRHXRPXXQEXP 803
P P R A P + T + P P P P
Sbjct: 385 VSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP 444
Query: 804 PDPQPXGXPQXKARSPPQPXX-PQXPXQPPXXTXPPPPXXXXP 929
P P +PP P P P PP PPP P
Sbjct: 445 AAPP---LPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 27.9 bits (59), Expect = 2.2
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +3
Query: 801 PPDPQPXGXPQXKARSPPQPXXPQXPXQPPXXTXPPPPXXXXPP 932
PP P P P S P P P P PP PP
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Score = 25.8 bits (54), Expect = 8.7
Identities = 17/64 (26%), Positives = 19/64 (29%), Gaps = 3/64 (4%)
Frame = +3
Query: 732 PQTTPRNTXGHPXRHXRPXXQEXPPDPQPXGXPQXKARSPPQ---PXXPQXPXQPPXXTX 902
P + RN P + PP P P PPQ P P P
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGR 374
Query: 903 PPPP 914
PPP
Sbjct: 375 QPPP 378
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.5 bits (68), Expect = 0.18
Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Frame = +3
Query: 765 PXRHXRPXXQEXP----PDPQPXGXPQXKARSPPQPXXPQXPXQPPXXTXPPPPXXXXP 929
P RP P P P P P +++PP P P QP PP P
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
Score = 29.1 bits (62), Expect = 0.94
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Frame = +3
Query: 783 PXXQEXPPDPQ---PXGXPQXKARSPPQ-PXXPQX-PXQPPXXTXPPPPXXXXP 929
P + PP P P P +SPP P P P PP PPPP P
Sbjct: 159 PIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKV--PPPPLSQAP 210
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/50 (30%), Positives = 16/50 (32%)
Frame = +3
Query: 783 PXXQEXPPDPQPXGXPQXKARSPPQPXXPQXPXQPPXXTXPPPPXXXXPP 932
P PP PQ P A P P PP + PP PP
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPP 173
Score = 27.5 bits (58), Expect = 2.9
Identities = 22/73 (30%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Frame = +3
Query: 732 PQTTPRNTXGHPXRHXRPXXQEXPPDPQPXGXPQXKARSPP--QPXXP--QXPXQP--PX 893
PQ+ R P R P P P P + PP QP P P P P
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPS 192
Query: 894 XTXPPPPXXXXPP 932
P PP PP
Sbjct: 193 AVPPMPPKVPPPP 205
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.23
Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Frame = +3
Query: 801 PPDPQPXGXPQXKARSPPQP--XXPQXPXQPPXXTXPP--PP 914
P PQ PQ A +PP P P P PP PP PP
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 30.3 bits (65), Expect = 0.41
Identities = 14/43 (32%), Positives = 14/43 (32%)
Frame = +3
Query: 801 PPDPQPXGXPQXKARSPPQPXXPQXPXQPPXXTXPPPPXXXXP 929
PP P PP P P P PP PP P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/43 (39%), Positives = 18/43 (41%)
Frame = +3
Query: 804 PDPQPXGXPQXKARSPPQPXXPQXPXQPPXXTXPPPPXXXXPP 932
P P PQ A PPQ P P PP + PPPP P
Sbjct: 1686 PVSTPPVRPQSAA--PPQMSAPTPP--PPPMSVPPPPSAPPMP 1724
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/35 (34%), Positives = 13/35 (37%)
Frame = +3
Query: 828 PQXKARSPPQPXXPQXPXQPPXXTXPPPPXXXXPP 932
P +PP P Q T PPPP PP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPP 1717
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.71
Identities = 20/66 (30%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Frame = +3
Query: 738 TTPRNTXGHPXRHXRPXXQEXPPDPQPXGXPQXKARS-PPQPXXPQXPXQPPXXTXPPPP 914
T P N G RP P P P S PP+ P P P T P P
Sbjct: 949 TRPSND-GRKASGPRPAAPPSIPPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAP 1007
Query: 915 XXXXPP 932
PP
Sbjct: 1008 LARVPP 1013
Score = 27.5 bits (58), Expect = 2.9
Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Frame = +3
Query: 801 PPDPQPXG---XPQXKARSPPQPXXPQXPXQP-PXXTXPPPPXXXXPP 932
PP P P G P+ +PP P P P P PP P P
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
Score = 27.1 bits (57), Expect = 3.8
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Frame = +3
Query: 801 PPDPQPXGX----PQXKARSPPQPXXPQXPXQP-PXXTXPP-PPXXXXPP 932
PP P P P+ A PP P + P P P PP PP PP
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPP 1218
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/50 (30%), Positives = 16/50 (32%)
Frame = +3
Query: 783 PXXQEXPPDPQPXGXPQXKARSPPQPXXPQXPXQPPXXTXPPPPXXXXPP 932
P PP P P G P P+P P P PP P P
Sbjct: 1077 PAPSGAPPVPAPSGIPPV-----PKPSVAAPPVPKPSVAVPPVPAPSGAP 1121
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Frame = +3
Query: 801 PPDPQPXG---XPQXKARSPPQPXXPQXPXQP-PXXTXPPPP 914
PP P P G P+ +PP P P P P PP P
Sbjct: 1131 PPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172
Score = 26.2 bits (55), Expect = 6.6
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Frame = +3
Query: 801 PPDPQPXG---XPQXKARSPPQPXXPQ--XPXQPPXXTXPP-PPXXXXPP 932
PP P P G P+ +PP P P P PP PP PP
Sbjct: 1150 PPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPP 1199
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.138 0.440
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,215,763
Number of Sequences: 5004
Number of extensions: 29714
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 473333082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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