Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_C07
         (934 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.56 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   5.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.56
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +3

Query: 732 PQTTPRNTXGHPXRHXRPXXQEXPPDPQPXGXP 830
           PQ +P  +   P R   P   + PP   P G P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 24.2 bits (50), Expect = 1.7
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 852 PQPXXPQXPXQPPXXTXPPPPXXXXPP 932
           PQP   Q P Q P    PP P    PP
Sbjct: 23  PQPSPHQSP-QAPQRGSPPNPSQGPPP 48



 Score = 22.6 bits (46), Expect = 5.2
 Identities = 12/42 (28%), Positives = 15/42 (35%)
 Frame = +3

Query: 804 PDPQPXGXPQXKARSPPQPXXPQXPXQPPXXTXPPPPXXXXP 929
           P PQP   P    ++P +   P     PP    P  P    P
Sbjct: 21  PGPQPS--PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +3

Query: 759 GHPXRHXRPXXQEXPPDPQP 818
           GH   H  P   + PP+ QP
Sbjct: 279 GHYGHHPDPGEVDLPPETQP 298


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.138    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,331
Number of Sequences: 438
Number of extensions: 3805
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30476628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)