Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_C06
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom...    31   0.14 
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    30   0.44 
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    29   1.0  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    27   4.1  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   5.4  

>SPBC1A4.07c |||U3 snoRNP-associated protein
           Sof1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 436

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 249 LXVFNDHTASATGVRFGKNAXNFVSTSMXRTLKLYGI 139
           L V+ DH ++   V F      FVS S  +T+++Y +
Sbjct: 266 LHVYKDHVSAVMSVDFSPTGQEFVSGSYDKTIRIYNV 302


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -2

Query: 324 FDXSGTYLAIAGTDVRVYLCRQWQE---LXVFNDHTASATGVRFGKNAXNFVSTSMXRTL 154
           F  SG  L     D ++ +   + +   L  F  H      + F ++  +F+STS  +T+
Sbjct: 275 FPISGHLLLSGSMDNQIKIWEVYHDRSLLRTFQGHARPIRDLSFSQDGRSFLSTSFDKTI 334

Query: 153 KLYGIE 136
           KL+  E
Sbjct: 335 KLWDTE 340


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 252 PATVC-TSTPSHQYRLWLNMYRXGRNTT 332
           P TVC T++P+H+   W+ +Y+   N +
Sbjct: 707 PITVCWTASPNHEINDWIGLYKLSDNAS 734


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -2

Query: 261 QWQELXVFNDHTASATGVRFGKNAXNFVSTSMXRTLKLY 145
           QW +L   + HT S  GV +      ++S    +T +L+
Sbjct: 359 QWLQLPSISGHTKSVKGVAWDPEGKFYLSAGTDQTTRLF 397



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/46 (21%), Positives = 22/46 (47%)
 Frame = -2

Query: 282 VRVYLCRQWQELXVFNDHTASATGVRFGKNAXNFVSTSMXRTLKLY 145
           +R+Y  + W +  V   H+ + T ++F  +    +S    R + L+
Sbjct: 560 IRLYETQSWNQQQVLKGHSLTVTTIKFSPDDRYILSAGRDRLVCLH 605


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -2

Query: 339 IKELCFDXSGTYLAIAGTD--VRVYLCRQWQELXVFNDHTASATGVRFGKNAXNFVSTSM 166
           I +LC+     +L     D  +R+Y     Q L    DH+    GV +       VS S 
Sbjct: 131 IYDLCWSVDSNFLIAGAMDNSLRLYDAHTGQLLTQKFDHSHYVQGVCWDPLNQYIVSESS 190

Query: 165 XRTLKLYGIE 136
            R++ LY I+
Sbjct: 191 DRSICLYEIQ 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,576,959
Number of Sequences: 5004
Number of extensions: 24534
Number of successful extensions: 41
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)