Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_C04
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              28   0.092
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 28.3 bits (60), Expect = 0.092
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -2

Query: 223  GHPKPLFXWXXGQNVPFEXNXRMKVLRSGXLVISSLLWSDXXXYTCRAEXAFGSE 59
            G P P   W   +    + + R++ L  G L I  +  +D   Y+C  E  FG +
Sbjct: 1302 GVPAPEVTWKV-RGAVLQSSDRLRQLPEGSLFIKEVDRTDAGEYSCYVENTFGHD 1355



 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 109 SDXXXYTCRAEXAFGSE 59
           SD   +TC A  AFGS+
Sbjct: 848 SDSALFTCVATNAFGSD 864


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 182 ILSXXPXEQGLGVSXGRGTGAP 247
           ILS  P + GLGV  G G   P
Sbjct: 194 ILSQHPQQHGLGVQNGYGRHLP 215


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 133 LVISSLLWSDXXXYTCRAEXAFGSEKAXTFVYPAEPE*QP 14
           L ISS   SD   Y C+A   +G ++    +   EP   P
Sbjct: 872 LQISSAEASDSGAYFCQASNLYGRDQQLVQLLVQEPPQPP 911


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 133 LVISSLLWSDXXXYTCRAEXAFGSEKAXTFVYPAEPE*QP 14
           L ISS   SD   Y C+A   +G ++    +   EP   P
Sbjct: 868 LQISSAEASDSGAYFCQASNLYGRDQQLVQLLVQEPPQPP 907


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,773
Number of Sequences: 438
Number of extensions: 2293
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)