Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_C03
         (1050 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    36   0.013
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.27 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    30   0.62 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   3.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.4  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    27   5.8  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 35.5 bits (78), Expect = 0.013
 Identities = 29/121 (23%), Positives = 38/121 (31%)
 Frame = +3

Query: 357 ANPPXTXXPXXHHPXXPGPPXXAXPTXQPXPXARKNPXXXETPXXXXXXPQXXNPXQXPK 536
           A  P T  P  ++P  P PP    P       A  N             P+   P   PK
Sbjct: 176 AAAPATSLPSDYNPPPPPPP----PPAVEDQAADANEPDDYYSSGRAVSPEIP-PTYTPK 230

Query: 537 NTNPXXTPXTPPPKHXPXXPTXPSTPTXPXXXXXXXXXXQKAXTAHXPSTXTKPTNPEKR 716
             +P   P  PPP   P  P   +T   P           +      P+T ++P  P   
Sbjct: 231 QADPLPAPPPPPPPTLP--PQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPPRPPTN 288

Query: 717 A 719
           A
Sbjct: 289 A 289


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.27
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +2

Query: 866  PPXKXPRPAXRXAPXRKTXPNHTPTRKXXPPTXPAPPXPXXQQPP 1000
            P    P P    AP +   P    T    P + PAPP P  Q PP
Sbjct: 1444 PQVVPPAPMHAVAPVQPKAPGMV-TNAPAPSSAPAPPAPVSQLPP 1487



 Score = 29.9 bits (64), Expect = 0.62
 Identities = 25/112 (22%), Positives = 32/112 (28%), Gaps = 4/112 (3%)
 Frame = +3

Query: 396  PXXPGPPXXAXP-TXQPXPXARKNPXXXETPXXXXXXPQXXNPXQXPKNTN--PXXTPXT 566
            P  PG P    P    P P     P   + P      P   +    P   +  P   P  
Sbjct: 1433 PTNPGAPSNHAPQVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVPNV 1492

Query: 567  PPPKHXPXXPTXPSTPTXPXXXXXXXXXXQKAXTAHXPS-TXTKPTNPEKRA 719
            P P   P     P +   P           ++  AH PS     P +P   A
Sbjct: 1493 PVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHPSAAA 1544



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 13/46 (28%), Positives = 15/46 (32%)
 Frame = +2

Query: 869  PXKXPRPAXRXAPXRKTXPNHTPTRKXXPPTXPAPPXPXXQQPPXP 1006
            P +   P     P     P   P     PP+ P PP P    P  P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 29.9 bits (64), Expect = 0.62
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 620 PXXATXHTNPHPKSXHRPPXXHXNQTHQP 706
           P   T H +PH +  H PP  H +  + P
Sbjct: 162 PFPPTQHHHPHTRPPHHPPHPHFHNNNYP 190


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 15/44 (34%), Positives = 17/44 (38%)
 Frame = +2

Query: 869  PXKXPRPAXRXAPXRKTXPNHTPTRKXXPPTXPAPPXPXXQQPP 1000
            P   P PA   AP  K+ P+        PP  P  P P   Q P
Sbjct: 168  PSSLPPPAQPAAPV-KSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +2

Query: 887  PAXRXAPXRKTXPNHTPTRKXXPPTXPAPPXPXXQQPPXP 1006
            P    AP     P   P     PP  PAPP      P  P
Sbjct: 448  PLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAP 487


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +2

Query: 932  TPTRKXXPPTXPAPPXPXXQQPP 1000
            T T    PP+ PAPP P   + P
Sbjct: 122  TSTTSASPPSAPAPPLPPSSEGP 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.304    0.125    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,377
Number of Sequences: 5004
Number of extensions: 17889
Number of successful extensions: 55
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 551223336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)