Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_C02
(1264 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 35 0.12
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 32 0.83
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 31 2.5
06_01_0178 + 1386981-1387505 30 3.4
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 7.7
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 35.1 bits (77), Expect = 0.12
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -2
Query: 1143 PXXXPRXPXXXPXSXGPXPPPXPXXPXXXXXXXXPXRXRXXGGPXPP 1003
P P+ P P + GP PPP P P P GGP PP
Sbjct: 337 PPPPPKGPPPPPPAKGPPPPPPPKGP---SPPPPPPPGGKKGGPPPP 380
Score = 30.3 bits (65), Expect = 3.4
Identities = 18/64 (28%), Positives = 19/64 (29%)
Frame = -2
Query: 1194 PXXPXAXXPXXGXXXXXPXXXPRXPXXXPXSXGPXPPPXPXXPXXXXXXXXPXRXRXXGG 1015
P P A P P + P P GP PPP P P P G
Sbjct: 329 PPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPP--PPGGKKGGPPPPPPKGGA 386
Query: 1014 PXPP 1003
PP
Sbjct: 387 SRPP 390
Score = 29.9 bits (64), Expect = 4.4
Identities = 20/81 (24%), Positives = 21/81 (25%), Gaps = 5/81 (6%)
Frame = -1
Query: 1141 PXXPPPXXXXXXLXXXXPPPXSXX-----SGXPXXXPXSXXXXXXRXPXPXPXXXXPXXX 977
P PPP PPP + G P P P P P
Sbjct: 313 PPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKGPSPPPPPPPGG 372
Query: 976 XXGGXXXXXPXXGXXXPPXPP 914
GG P G PP P
Sbjct: 373 KKGGPPPPPPKGGASRPPAAP 393
Score = 29.1 bits (62), Expect = 7.7
Identities = 18/65 (27%), Positives = 18/65 (27%)
Frame = -1
Query: 1015 PXPXPXXXXPXXXXXGGXXXXXPXXGXXXPPXPPXXXXPXXXXXXPXXXXXXXXPXPXGX 836
P P P P G P G PP PP P P P G
Sbjct: 327 PPPPPPKAAPPPPPPKGPPPPPPAKGPP-PPPPPKGPSPPPPPPPGGKKGGPPPPPPKGG 385
Query: 835 XXRPP 821
RPP
Sbjct: 386 ASRPP 390
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 32.3 bits (70), Expect = 0.83
Identities = 24/91 (26%), Positives = 25/91 (27%), Gaps = 7/91 (7%)
Frame = -1
Query: 1165 SGGXXXXXPXXPPPXXXXXXLXXXXPPPXSXXSGXPXXXPXSXXXXXXRXPXP------- 1007
S G P PPP PPP S +G P P P P
Sbjct: 1074 SVGIQGGIPPLPPPLPPTLGDYGVAPPPPSIGAGAPPPPPPPGGITGVPPPPPIGGLGGH 1133
Query: 1006 XPXXXXPXXXXXGGXXXXXPXXGXXXPPXPP 914
P GG P G PP PP
Sbjct: 1134 QAPPAPPLPEGIGGVPPPPPVGGLGGPPAPP 1164
>08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.7 bits (66), Expect = 2.5
Identities = 14/40 (35%), Positives = 14/40 (35%)
Frame = -2
Query: 1185 PXAXXPXXGXXXXXPXXXPRXPXXXPXSXGPXPPPXPXXP 1066
P P G P P P P S P PPP P P
Sbjct: 92 PPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPPTQP 131
>06_01_0178 + 1386981-1387505
Length = 174
Score = 30.3 bits (65), Expect = 3.4
Identities = 19/64 (29%), Positives = 19/64 (29%)
Frame = +2
Query: 1004 GGXGPPXXRXRXGXXXXXXXXGXXGXGGGXGPXEXGXXXGXRGXXXGXXXXXPXXGXXAX 1183
G G P R R G G G GGG G G G G G G
Sbjct: 13 GEPGQPGGRGRGGRGGRGGRGGASGGGGGGGGGGGGGGGGGAGGKGGKGGAGGHGGAGGG 72
Query: 1184 GXXG 1195
G G
Sbjct: 73 GGGG 76
>10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 7.7
Identities = 18/76 (23%), Positives = 19/76 (25%)
Frame = -1
Query: 1141 PXXPPPXXXXXXLXXXXPPPXSXXSGXPXXXPXSXXXXXXRXPXPXPXXXXPXXXXXGGX 962
P PPP L PPP P + P P P P
Sbjct: 621 PPPPPPLPNHSVLPPPPPPPPPPSLPNRLVPPPPAPGIGNKFPAPPPPPPPPRSSSRTPT 680
Query: 961 XXXXPXXGXXXPPXPP 914
G PP PP
Sbjct: 681 GAATSSKGPPPPPPPP 696
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.157 0.544
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,502,854
Number of Sequences: 37544
Number of extensions: 129566
Number of successful extensions: 494
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3910923072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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