Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_C02
(1264 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.3
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 1.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 1.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 1.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 3.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 3.0
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.5 bits (68), Expect = 1.3
Identities = 23/80 (28%), Positives = 24/80 (30%)
Frame = -2
Query: 1242 GRPXXXGGXXXSGXXXPXXPXAXXPXXGXXXXXPXXXPRXPXXXPXSXGPXPPPXPXXPX 1063
G P G +G P P P P P P S GP PPP P
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPI---TGGPPPPPPPGGLPPISGGPPPPPPPPG-G 767
Query: 1062 XXXXXXXPXRXRXXGGPXPP 1003
P GGP PP
Sbjct: 768 CPPPPPPPPPGGFKGGPPPP 787
Score = 30.3 bits (65), Expect = 3.0
Identities = 21/73 (28%), Positives = 22/73 (30%)
Frame = -2
Query: 1131 PRXPXXXPXSXGPXPPPXPXXPXXXXXXXXPXRXRXXGGPXPPXXXXXXXXXXSGXXXXX 952
P P P + GP PPP P P GGP PP G
Sbjct: 714 PPPPGLPPITGGPPPPPPPGG--------LPP---ITGGPPPPPPPGGLPPISGGPPPPP 762
Query: 951 XPXXAXXXPPXPP 913
P PP PP
Sbjct: 763 PPPGGCPPPPPPP 775
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.5 bits (68), Expect = 1.3
Identities = 23/80 (28%), Positives = 24/80 (30%)
Frame = -2
Query: 1242 GRPXXXGGXXXSGXXXPXXPXAXXPXXGXXXXXPXXXPRXPXXXPXSXGPXPPPXPXXPX 1063
G P G +G P P P P P P S GP PPP P
Sbjct: 712 GPPPPPGLPPITGGPPPPPPPGGLPPI---TGGPPPPPPPGGLPPISGGPPPPPPPPG-G 767
Query: 1062 XXXXXXXPXRXRXXGGPXPP 1003
P GGP PP
Sbjct: 768 CPPPPPPPPPGGFKGGPPPP 787
Score = 30.3 bits (65), Expect = 3.0
Identities = 21/73 (28%), Positives = 22/73 (30%)
Frame = -2
Query: 1131 PRXPXXXPXSXGPXPPPXPXXPXXXXXXXXPXRXRXXGGPXPPXXXXXXXXXXSGXXXXX 952
P P P + GP PPP P P GGP PP G
Sbjct: 714 PPPPGLPPITGGPPPPPPPGG--------LPP---ITGGPPPPPPPGGLPPISGGPPPPP 762
Query: 951 XPXXAXXXPPXPP 913
P PP PP
Sbjct: 763 PPPGGCPPPPPPP 775
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.5 bits (68), Expect = 1.3
Identities = 23/80 (28%), Positives = 24/80 (30%)
Frame = -2
Query: 1242 GRPXXXGGXXXSGXXXPXXPXAXXPXXGXXXXXPXXXPRXPXXXPXSXGPXPPPXPXXPX 1063
G P G +G P P P P P P S GP PPP P
Sbjct: 295 GPPPPPGLPPITGGPPPPPPPGGLPPI---TGGPPPPPPPGGLPPISGGPPPPPPPPG-G 350
Query: 1062 XXXXXXXPXRXRXXGGPXPP 1003
P GGP PP
Sbjct: 351 CPPPPPPPPPGGFKGGPPPP 370
Score = 30.3 bits (65), Expect = 3.0
Identities = 21/73 (28%), Positives = 22/73 (30%)
Frame = -2
Query: 1131 PRXPXXXPXSXGPXPPPXPXXPXXXXXXXXPXRXRXXGGPXPPXXXXXXXXXXSGXXXXX 952
P P P + GP PPP P P GGP PP G
Sbjct: 297 PPPPGLPPITGGPPPPPPPGG--------LPP---ITGGPPPPPPPGGLPPISGGPPPPP 345
Query: 951 XPXXAXXXPPXPP 913
P PP PP
Sbjct: 346 PPPGGCPPPPPPP 358
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 31.1 bits (67), Expect = 1.7
Identities = 22/88 (25%), Positives = 23/88 (26%)
Frame = -1
Query: 1084 PXSXXSGXPXXXPXSXXXXXXRXPXPXPXXXXPXXXXXGGXXXXXPXXGXXXPPXPPXXX 905
P SG P P + R P P G P G PP PP
Sbjct: 247 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGS 306
Query: 904 XPXXXXXXPXXXXXXXXPXPXGXXXRPP 821
P P P P G PP
Sbjct: 307 PPTGSLPPP---QAGGSPPPAGTGSPPP 331
Score = 29.1 bits (62), Expect = 7.0
Identities = 26/107 (24%), Positives = 28/107 (26%)
Frame = -1
Query: 1141 PXXPPPXXXXXXLXXXXPPPXSXXSGXPXXXPXSXXXXXXRXPXPXPXXXXPXXXXXGGX 962
P PPP L PP +G P P + P P P P G
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPP-PRTGS------PPPPPTGSPPPPPAGGSP 289
Query: 961 XXXXPXXGXXXPPXPPXXXXPXXXXXXPXXXXXXXXPXPXGXXXRPP 821
P PP PP P P P G PP
Sbjct: 290 P---PPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 333
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 31.1 bits (67), Expect = 1.7
Identities = 22/88 (25%), Positives = 23/88 (26%)
Frame = -1
Query: 1084 PXSXXSGXPXXXPXSXXXXXXRXPXPXPXXXXPXXXXXGGXXXXXPXXGXXXPPXPPXXX 905
P SG P P + R P P G P G PP PP
Sbjct: 268 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGS 327
Query: 904 XPXXXXXXPXXXXXXXXPXPXGXXXRPP 821
P P P P G PP
Sbjct: 328 PPTGSLPPP---QAGGSPPPAGTGSPPP 352
Score = 29.1 bits (62), Expect = 7.0
Identities = 26/107 (24%), Positives = 28/107 (26%)
Frame = -1
Query: 1141 PXXPPPXXXXXXLXXXXPPPXSXXSGXPXXXPXSXXXXXXRXPXPXPXXXXPXXXXXGGX 962
P PPP L PP +G P P + P P P P G
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPP-PRTGS------PPPPPTGSPPPPPAGGSP 310
Query: 961 XXXXPXXGXXXPPXPPXXXXPXXXXXXPXXXXXXXXPXPXGXXXRPP 821
P PP PP P P P G PP
Sbjct: 311 P---PPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 354
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 31.1 bits (67), Expect = 1.7
Identities = 22/88 (25%), Positives = 23/88 (26%)
Frame = -1
Query: 1084 PXSXXSGXPXXXPXSXXXXXXRXPXPXPXXXXPXXXXXGGXXXXXPXXGXXXPPXPPXXX 905
P SG P P + R P P G P G PP PP
Sbjct: 253 PPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGS 312
Query: 904 XPXXXXXXPXXXXXXXXPXPXGXXXRPP 821
P P P P G PP
Sbjct: 313 PPTGSLPPP---QAGGSPPPAGTGSPPP 337
Score = 29.1 bits (62), Expect = 7.0
Identities = 26/107 (24%), Positives = 28/107 (26%)
Frame = -1
Query: 1141 PXXPPPXXXXXXLXXXXPPPXSXXSGXPXXXPXSXXXXXXRXPXPXPXXXXPXXXXXGGX 962
P PPP L PP +G P P + P P P P G
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPP-PRTGS------PPPPPTGSPPPPPAGGSP 295
Query: 961 XXXXPXXGXXXPPXPPXXXXPXXXXXXPXXXXXXXXPXPXGXXXRPP 821
P PP PP P P P G PP
Sbjct: 296 P---PPRAGSPPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPP 339
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical protein
C08B11.5 protein.
Length = 388
Score = 30.3 bits (65), Expect = 3.0
Identities = 26/96 (27%), Positives = 27/96 (28%), Gaps = 2/96 (2%)
Frame = -2
Query: 1194 PXXPXAXXPXXGXXXXXPXXXPRXPXXXPXSXGPXPPPXPXXPXXXXXXXXPXRXRXXGG 1015
P P + P P PR P P S G PPP P P P G
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPP--PPSSGMWPPPPPPPP-----GRTPGPPGMPGM 316
Query: 1014 PXPPXXXXXXXXXXSGXXXXXXP--XXAXXXPPXPP 913
P PP G P PP PP
Sbjct: 317 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 352
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA binding
protein protein.
Length = 398
Score = 30.3 bits (65), Expect = 3.0
Identities = 26/96 (27%), Positives = 27/96 (28%), Gaps = 2/96 (2%)
Frame = -2
Query: 1194 PXXPXAXXPXXGXXXXXPXXXPRXPXXXPXSXGPXPPPXPXXPXXXXXXXXPXRXRXXGG 1015
P P + P P PR P P S G PPP P P P G
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPP--PPSSGMWPPPPPPPP-----GRTPGPPGMPGM 326
Query: 1014 PXPPXXXXXXXXXXSGXXXXXXP--XXAXXXPPXPP 913
P PP G P PP PP
Sbjct: 327 PPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPP 362
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.312 0.157 0.544
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,765,291
Number of Sequences: 27780
Number of extensions: 72772
Number of successful extensions: 403
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3516412346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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