Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_C01
(780 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0892 + 7037384-7037795,7038447-7038962,7039507-7039593,703... 31 1.0
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 30 1.8
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 2.4
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 3.1
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423 29 4.1
05_01_0210 + 1583176-1584177 29 5.5
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 5.5
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 28 7.2
03_04_0042 - 16743440-16743454,16743907-16744002,16744257-167444... 28 7.2
>01_01_0892 +
7037384-7037795,7038447-7038962,7039507-7039593,
7039698-7039768,7040148-7040224,7040380-7040527,
7040973-7041134,7041374-7041694
Length = 597
Score = 31.1 bits (67), Expect = 1.0
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 695 PPKAXPPHRVXXXXXPPPPXXPP 763
PP PPH + PPPP PP
Sbjct: 111 PPPPPPPHLLHYYGHPPPPPPPP 133
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -2
Query: 212 TRCSSCFXNTPCSRRMVCPGTR*VEHN 132
T C C P + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301
Score = 29.1 bits (62), Expect = 4.1
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -2
Query: 212 TRCSSCFXNTPCSRRMVCPGTR 147
TRC C P R CPG+R
Sbjct: 81 TRCKECLARAPAGVRQECPGSR 102
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 695 PPKAXPPHRVXXXXXPPPPXXPP 763
PP PP+ V PPPP PP
Sbjct: 92 PPPPPPPYGVNSSQPPPPPPPPP 114
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/54 (27%), Positives = 18/54 (33%)
Frame = +2
Query: 608 PXPGTXXXXXXTPTGXXXPASXXLXXXTXPPKAXPPHRVXXXXXPPPPXXPPXL 769
P P + P P + PP PP + PPPP PP L
Sbjct: 574 PLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPL 627
>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
Length = 427
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = -2
Query: 212 TRCSSCFXNTPCSRRMVCPGTR*VEHN 132
T+C C P VCPG+R V N
Sbjct: 93 TQCKECLAGAPAGITQVCPGSRTVNAN 119
>05_01_0210 + 1583176-1584177
Length = 333
Score = 28.7 bits (61), Expect = 5.5
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 695 PPKAXPPHRVXXXXXPPPPXXPP 763
P A PPH PPPP PP
Sbjct: 17 PLLASPPHHFAPDPLPPPPPPPP 39
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 28.7 bits (61), Expect = 5.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +2
Query: 695 PPKAXPPHRVXXXXXPPPPXXPP 763
PP PP ++ PPPP PP
Sbjct: 358 PPPPPPPPKLNTAPKPPPPPPPP 380
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 28.3 bits (60), Expect = 7.2
Identities = 20/46 (43%), Positives = 20/46 (43%)
Frame = +2
Query: 641 TPTGXXXPASXXLXXXTXPPKAXPPHRVXXXXXPPPPXXPPXLSXS 778
TPT PAS L T P A PP PPPP PP S S
Sbjct: 55 TPTSPP-PASPPLPSATPPLAASPP--------PPPPPPPPRNSPS 91
>03_04_0042 -
16743440-16743454,16743907-16744002,16744257-16744475,
16744830-16744910,16745092-16745187,16745981-16746045,
16746131-16746217,16746522-16746720
Length = 285
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = +2
Query: 695 PPKAXPPHRVXXXXXPPPPXXPPXLS 772
PP A P R PPPP PP L+
Sbjct: 3 PPTALLPGRSAAPRPPPPPPPPPQLA 28
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.133 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,174,493
Number of Sequences: 37544
Number of extensions: 253352
Number of successful extensions: 987
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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