Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_C01
         (780 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-399|AAM68891.2|  409|Drosophila melanogaster CG11112-PB...    25   1.8  
AY119618-1|AAM50272.1|  683|Drosophila melanogaster LD44584p pro...    29   7.2  
AE014297-2154|AAF55277.1|  787|Drosophila melanogaster CG4316-PA...    29   7.2  

>AE013599-399|AAM68891.2|  409|Drosophila melanogaster CG11112-PB,
           isoform B protein.
          Length = 409

 Score = 25.4 bits (53), Expect(2) = 1.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 695 PPKAXPPHRVXXXXXPPPPXXPP 763
           PP    P R      PPPP  PP
Sbjct: 215 PPPFYKPSRPNRRPPPPPPPPPP 237



 Score = 24.2 bits (50), Expect(2) = 1.8
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 740 PPPPXXPPXLSXS 778
           PPPP  PP LS S
Sbjct: 235 PPPPPPPPTLSPS 247


>AY119618-1|AAM50272.1|  683|Drosophila melanogaster LD44584p
           protein.
          Length = 683

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
 Frame = +2

Query: 644 PTGXXXPASXXLXXXTXPPKAXPPHR---VXXXXXPPPPXXPPXLSXS 778
           PTG   P    L     P K   P +   V     PPPP  PP  S S
Sbjct: 212 PTGWTKPGIVNLPMPARPSKPSKPTKKPIVYDRTPPPPPSVPPSTSTS 259


>AE014297-2154|AAF55277.1|  787|Drosophila melanogaster CG4316-PA
           protein.
          Length = 787

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
 Frame = +2

Query: 644 PTGXXXPASXXLXXXTXPPKAXPPHR---VXXXXXPPPPXXPPXLSXS 778
           PTG   P    L     P K   P +   V     PPPP  PP  S S
Sbjct: 316 PTGWTKPGIVNLPMPARPSKPSKPTKKPIVYDRTPPPPPSVPPSTSTS 363


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.314    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,656,004
Number of Sequences: 53049
Number of extensions: 390673
Number of successful extensions: 1240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)