Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_C01
         (780 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna bi...    28   6.5  
AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical ...    28   6.5  
U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein ...    28   8.6  
AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.    28   8.6  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    28   8.6  

>U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 7 protein.
          Length = 332

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -1

Query: 777 DXERXGGXXGGGGXXXXXTRCGGXAFGG 694
           D    GG  GGGG      R GG  +GG
Sbjct: 259 DNRGGGGGFGGGGRDRFNDRSGGGGYGG 286


>AF039043-7|AAY86190.1|  103|Caenorhabditis elegans Hypothetical
           protein F39C12.4 protein.
          Length = 103

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 218 CCTRCSSCFXNTPCSRRMVCP 156
           CCT    CF +T CS   VCP
Sbjct: 53  CCTN-EECFMSTECSYSAVCP 72


>U55373-1|AAC25894.1| 1829|Caenorhabditis elegans Lethal protein 418
            protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +1

Query: 169  LLEQGVXXKQELQRVQQAGRYLQP--MKPLAPVF 264
            L+EQ +  +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


>AF308445-1|AAG29838.1| 1829|Caenorhabditis elegans LET-418 protein.
          Length = 1829

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
 Frame = +1

Query: 169  LLEQGVXXKQELQRVQQAGRYLQP--MKPLAPVF 264
            L+EQ +  +++L+R   A R+LQP  + PLA  F
Sbjct: 1591 LIEQSLVIEEQLRRAAHANRHLQPDNVGPLAQRF 1624


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +2

Query: 695  PPKAXPPHRVXXXXXPPPPXXPPXLS 772
            PP   PP        PPPP  PP +S
Sbjct: 1341 PPPPPPPPSDDLTPVPPPPPPPPTMS 1366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.314    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,101,149
Number of Sequences: 27780
Number of extensions: 170279
Number of successful extensions: 597
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)