Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_B24
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    27   3.7  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    26   4.9  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    26   6.5  

>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 564 DGADVENDPDRSAEQEYTDGLLV 496
           DG D  +D    AE+EY+DGL++
Sbjct: 812 DGNDSSDDDRGFAEEEYSDGLVL 834


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
 Frame = +2

Query: 80  SSASFSRWRT-ATAVSTSRYRHLN--LSRSPSPAAGTTCS 190
           +S + SR  + ++AVS S   +LN  +S  PSP + TTCS
Sbjct: 365 TSGNLSRTGSESSAVSLSDTTNLNTPISDIPSPGSSTTCS 404


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 7/48 (14%)
 Frame = +2

Query: 491 RYTSRPSVYSCSA-LRSGSFS------TSAPSQEATTTPELDALEDAP 613
           R T+ P+ ++  A L+SG+ S      +++  QEATT+P L A  + P
Sbjct: 64  RLTAAPNTHAQQANLQSGNTSITHETQSTSRGQEATTSPSLSASHEKP 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,524
Number of Sequences: 5004
Number of extensions: 38190
Number of successful extensions: 143
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)