Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_B24
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0742 + 24027506-24027721,24028835-24029004,24029893-240300... 34 0.14
03_02_0184 + 6232429-6232515,6232634-6232751,6233198-6233286,623... 31 0.73
03_05_0640 - 26326832-26327166,26327295-26327529,26327665-263279... 30 1.7
01_07_0235 + 42198662-42199615,42200129-42200746 29 3.9
01_07_0237 + 42204301-42205200,42205356-42206030 29 5.1
08_02_0959 - 23055078-23055177,23055408-23055985 28 6.8
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 28 6.8
02_05_0170 - 26431937-26434282 28 6.8
01_01_0780 - 6036454-6037992 28 6.8
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 28 9.0
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 28 9.0
>06_03_0742 + 24027506-24027721,24028835-24029004,24029893-24030052,
24030162-24030455,24031490-24031717,24031827-24032006,
24032079-24032238,24032591-24032617,24033426-24033613,
24034269-24034532,24035123-24035218,24035311-24035399,
24035473-24035620,24035842-24036051,24036141-24036440,
24037906-24038248,24038747-24038952,24039071-24039273,
24040021-24040117,24040148-24040222,24040328-24040602,
24041116-24041256,24041469-24042339,24042481-24042520,
24042605-24043050
Length = 1808
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = -2
Query: 558 ADVENDPDRSAEQEYTDGLLVYRSEGDDIADGEEGYSSSAVSEEEVKYDP 409
+D EN+ D A+ E + E DD A+ EEG+ + SEE+ K P
Sbjct: 1507 SDGENEDDLGADAEKWKRQEIDEMEYDDDAEKEEGFDMDSESEEDTKSKP 1556
>03_02_0184 +
6232429-6232515,6232634-6232751,6233198-6233286,
6233364-6233428,6233520-6233608,6234167-6234300,
6234387-6235133
Length = 442
Score = 31.5 bits (68), Expect = 0.73
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 497 TSRPSVYSCSALRSGSFSTSAPSQEATTTP 586
TS PS+ S L + SFS ++P+ +TTTP
Sbjct: 288 TSSPSLIGASPLSARSFSFASPAARSTTTP 317
>03_05_0640 -
26326832-26327166,26327295-26327529,26327665-26327908,
26328389-26328507,26328860-26329050,26329133-26329220,
26331653-26331715,26331816-26333944,26334084-26334186
Length = 1168
Score = 30.3 bits (65), Expect = 1.7
Identities = 23/60 (38%), Positives = 29/60 (48%)
Frame = -2
Query: 489 SEGDDIADGEEGYSSSAVSEEEVKYDPSVWQSVIRYGPEDKEIHPAVRGTASAVVTVRTA 310
SEGD ADGEE S ++ +K + +W S + DK PA G A A V V A
Sbjct: 571 SEGDRAADGEE----SPEADHGMKSELGMWPSYL-----DKISKPAAAGAALAAVIVPAA 621
>01_07_0235 + 42198662-42199615,42200129-42200746
Length = 523
Score = 29.1 bits (62), Expect = 3.9
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 190 PFPERVRQLRKMCELWVPAPRR 255
PF + +R+LRK+C L + +PRR
Sbjct: 127 PFSKHLRELRKLCTLELLSPRR 148
>01_07_0237 + 42204301-42205200,42205356-42206030
Length = 524
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +1
Query: 190 PFPERVRQLRKMCELWVPAPRR 255
PF + +R+LRK+C L + +PRR
Sbjct: 123 PFGKHLRELRKLCALELLSPRR 144
>08_02_0959 - 23055078-23055177,23055408-23055985
Length = 225
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +2
Query: 545 FSTSAPSQEATTTPELDALEDAPXGCFRPRREIV*CNGS*TLAKYHL-RQXATSRVYEPV 721
F P T P+++ D P ++ C GS T+++YH+ + T+ E
Sbjct: 145 FPWPPPPTVTMTVPDMELHFDGGANMLHPILSLLFCRGSTTVSQYHVSTEKYTTNGIEID 204
Query: 722 TYL 730
TYL
Sbjct: 205 TYL 207
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +3
Query: 492 DTPVDHQCTLALRCGLDHSQHQLRPKKRQRLQSWTRWKMPP 614
DTP L ++ + HQ P K Q SW W P
Sbjct: 583 DTPPAVSSQAELNSPVESTSHQSLPPKHQHKTSWGHWSDQP 623
>02_05_0170 - 26431937-26434282
Length = 781
Score = 28.3 bits (60), Expect = 6.8
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 492 RSEGDDIADGEEGYSSSAVS-EEEVKYDPSVWQSVIRYGPEDKE 364
+ + D+ DG ++ +EE+KYDP + + + Y P +E
Sbjct: 8 KRKAQDMIDGNGTSCPEEINWDEEIKYDPGLRKEIDAYHPNHRE 51
>01_01_0780 - 6036454-6037992
Length = 512
Score = 28.3 bits (60), Expect = 6.8
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -2
Query: 531 SAEQEYTDGLLVYRSEGDDIADGEEGYSSSAVSEEEVKYDPSVWQSVIRYGPEDKEIHPA 352
SA + D L R+E + E G +A E+KY +V + V+RY P + P
Sbjct: 326 SALDSHPDVLARVRAEVAALWSPESGEPITAEMMTEMKYTQAVAREVVRYWPPGPVV-PH 384
Query: 351 VRGTA 337
+ G A
Sbjct: 385 IAGEA 389
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 122 RPPWPCASARRKPTSCPSSNGTTTLVYERM 33
RPP P A+A R+P + P G T + + M
Sbjct: 248 RPPPPMAAAPRQPAALPPVPGATVVPFTTM 277
>01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 27.9 bits (59), Expect = 9.0
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = -2
Query: 564 DGADVENDPDRSAEQEYTDGLL---VYRSEGDDIADGEEGYSSSAVSEEEVKYDPSVWQS 394
D + ++D D S +++ L + SE +D +DG++ SSS VS +E D S +
Sbjct: 1710 DSSSSDDDDDESGDEDDGSDELPAEMESSEEEDGSDGQDESSSSMVSTDE--EDESDEED 1767
Query: 393 VIRYGPEDKEIHPAVRGTASAVVTVRTA 310
I PE ++ A T S+ +TA
Sbjct: 1768 EIPEKPESSKL-TAAGSTLSSGKKSKTA 1794
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,217,351
Number of Sequences: 37544
Number of extensions: 297507
Number of successful extensions: 1078
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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