Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_B21
(877 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 41 2e-04
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 36 0.006
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 33 0.071
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 32 0.12
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 32 0.12
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.22
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 30 0.38
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.66
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 28 1.5
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb... 26 6.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 8.1
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 41.1 bits (92), Expect = 2e-04
Identities = 41/160 (25%), Positives = 43/160 (26%), Gaps = 20/160 (12%)
Frame = +3
Query: 411 GGGXXXXXXPPPPPPLXLXXXXXXXXXXXXRAXTKPXXXXXXPXRXGXGGXPPPXXXPX- 587
G G PPPPPP R+ P P G PPP
Sbjct: 328 GNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP---STGRQPPPLSSSRA 384
Query: 588 ---PXXPPPQXXXR----------------PXXPXPPXXPPSXPPXXPPXXLSXXPXPXX 710
P PPP R P P PP PPS PP PP + P
Sbjct: 385 VSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPS--APPSLPMG 442
Query: 711 RXAXXXAXXXGPXXXPXXXPPPXXXXXSPLAXXXPXXPXP 830
A P P P P A P P P
Sbjct: 443 APAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 35.9 bits (79), Expect = 0.008
Identities = 37/148 (25%), Positives = 41/148 (27%), Gaps = 4/148 (2%)
Frame = +1
Query: 439 PPPPPPXFXXXXXXGGGGGGXGXXQNPXXXXPXPXGXGGGXXXXXPXXPXXXXPPXXXXT 618
PPPPPP G G G + P P P PP +
Sbjct: 311 PPPPPPP--SRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Query: 619 APXDXXPRGPPQAXPPXXPPXXXXXPPPPPPXXXRGXPGSXXL--XXXXXXXPLPXXXXX 792
AP R PP P P PPP R P L P+P
Sbjct: 369 APSTG--RQPP---PLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSL 423
Query: 793 PPXR--XXPPXXPXLXXFPXPXXXPVXP 870
PP PP P P P+ P
Sbjct: 424 PPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Score = 31.1 bits (67), Expect = 0.22
Identities = 32/138 (23%), Positives = 35/138 (25%), Gaps = 9/138 (6%)
Frame = +3
Query: 438 PPPPPPLXLXXXXXXXXXXXXRAXTKPXXXXXXPXRXGXGGXP-PPXXXPXPXXPPPQXX 614
PPPPPP + P P G P PP P PPP+
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLP-PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSA 369
Query: 615 XRPXXPXPP-------XXPPSXPPXXPPXXLSXXPXPXXRXAXXXAXXXGPXXXPXXXPP 773
PP PP+ PP P P P P PP
Sbjct: 370 PSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPP 429
Query: 774 PXXXXXSP-LAXXXPXXP 824
P L P P
Sbjct: 430 SLPPSAPPSLPMGAPAAP 447
Score = 28.7 bits (61), Expect = 1.1
Identities = 21/72 (29%), Positives = 22/72 (30%), Gaps = 2/72 (2%)
Frame = +3
Query: 567 PPXXXPXPXXPPPQXXXRPXXPXP--PXXPPSXPPXXPPXXLSXXPXPXXRXAXXXAXXX 740
PP P P PP P P P P+ PP PP P P A
Sbjct: 415 PPVPTP-PSLPPSAPPSLPPSAPPSLPMGAPAAPP-LPPSAPIAPPLPAGMPAAPPLPPA 472
Query: 741 GPXXXPXXXPPP 776
P P P P
Sbjct: 473 APAPPPAPAPAP 484
Score = 28.3 bits (60), Expect = 1.5
Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 6/47 (12%)
Frame = +3
Query: 567 PPXXXPXPXXPPPQXXXRPXXPXPPXXPP------SXPPXXPPXXLS 689
PP P PP+ P PP PP S PP PP ++
Sbjct: 230 PPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIA 276
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/36 (33%), Positives = 13/36 (36%)
Frame = +3
Query: 570 PXXXPXPXXPPPQXXXRPXXPXPPXXPPSXPPXXPP 677
P P PP RP P P+ PP PP
Sbjct: 224 PTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPP 259
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 36.3 bits (80), Expect = 0.006
Identities = 18/45 (40%), Positives = 18/45 (40%)
Frame = +3
Query: 564 PPPXXXPXPXXPPPQXXXRPXXPXPPXXPPSXPPXXPPXXLSXXP 698
PP P P PP P P P PPS PP PP S P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP--PPLPASSAP 1741
Score = 32.3 bits (70), Expect = 0.093
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +3
Query: 564 PPPXXXPXPXXPPPQXXXRPXXPXPPXXPPSXPPXXP 674
PPP P P PP P P PP P S P P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAP-PPPLPASSAPSVP 1744
Score = 31.5 bits (68), Expect = 0.16
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Frame = +1
Query: 598 PPXXXXTAPXDXXPRGPPQAXPPXXPPXXXXXPPPP-PPXXXRGXPGS 738
P T P PPQ P PP PPPP P G P +
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSA 1730
Score = 29.1 bits (62), Expect = 0.87
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +1
Query: 574 PXXPXXXXPPXXXXTAPXDXXPRGPPQAXPPXXPPXXXXXPPPPPP 711
P P PP P PP P P PPPP P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 26.6 bits (56), Expect = 4.6
Identities = 16/44 (36%), Positives = 17/44 (38%)
Frame = +1
Query: 574 PXXPXXXXPPXXXXTAPXDXXPRGPPQAXPPXXPPXXXXXPPPP 705
P P PP +AP P GPP A PP P P P
Sbjct: 1707 PPPPPMSVPPPP--SAPP--MPAGPPSAPPPPLPASSAPSVPNP 1746
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/45 (28%), Positives = 13/45 (28%)
Frame = +3
Query: 570 PXXXPXPXXPPPQXXXRPXXPXPPXXPPSXPPXXPPXXLSXXPXP 704
P P PP P P PP P P S P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.7 bits (71), Expect = 0.071
Identities = 16/45 (35%), Positives = 16/45 (35%)
Frame = +3
Query: 564 PPPXXXPXPXXPPPQXXXRPXXPXPPXXPPSXPPXXPPXXLSXXP 698
P P P P P P P P P PP PP LS P
Sbjct: 166 PIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
Score = 31.5 bits (68), Expect = 0.16
Identities = 22/81 (27%), Positives = 24/81 (29%), Gaps = 1/81 (1%)
Frame = +3
Query: 564 PPPXXXPXPXXPPPQXXXRPXXPXP-PXXPPSXPPXXPPXXLSXXPXPXXRXAXXXAXXX 740
P P PP RP P P P P P PP S P P A +
Sbjct: 128 PAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIP-SSLPPPAQPAAPVKSPPS 186
Query: 741 GPXXXPXXXPPPXXXXXSPLA 803
P P P PL+
Sbjct: 187 APSLPSAVPPMPPKVPPPPLS 207
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 31.9 bits (69), Expect = 0.12
Identities = 18/47 (38%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Frame = -1
Query: 703 GXGXXXSXXGGNXGGXLGGXXGGXGXXG-RXXXXGGGXXGXGXXXGG 566
G G GG GG GG GG G G GG G G GG
Sbjct: 24 GRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 27.1 bits (57), Expect = 3.5
Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Frame = -3
Query: 707 GGGGGXXXXXGGXXGGXA-WGGPRGXXSXGAVXXLXGGXXWXG 582
GG GG GG GG +GG RG G GG G
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRG 51
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.9 bits (69), Expect = 0.12
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Frame = +3
Query: 564 PPPXXXPXPXXPP-PQXXXRPXXPXPPXXPPSXPPXXPP 677
P P P P PP P P P PP + PP PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 29.5 bits (63), Expect = 0.66
Identities = 18/57 (31%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Frame = +1
Query: 619 APXDXXPRGPPQAXPPXXPPXXXXX----PPPPPPXXXRGXPGSXXLXXXXXXXPLP 777
AP P P PP PP PPPPPP GS P P
Sbjct: 747 APIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 29.5 bits (63), Expect = 0.66
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = -3
Query: 557 PPPXPXGXGXXXXGFCXXPXPPPPPP 480
PPP P G G P PPPPPP
Sbjct: 761 PPPPPPPPGVAGAG---PPPPPPPPP 783
Score = 29.1 bits (62), Expect = 0.87
Identities = 14/46 (30%), Positives = 14/46 (30%)
Frame = +3
Query: 567 PPXXXPXPXXPPPQXXXRPXXPXPPXXPPSXPPXXPPXXLSXXPXP 704
PP P P P P P P PP PP P P
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPP 777
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = +1
Query: 637 PRGPPQAXPPXXPPXXXXXPPPPPPXXXRGXP 732
P P PP P PPPPPP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775
Score = 27.5 bits (58), Expect = 2.7
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 558 PPXPPGWGGXXXXGVLXXPAXPPPPPP 478
PP PPG G P PPPPPP
Sbjct: 764 PPPPPGVAGAG-------PPPPPPPPP 783
Score = 27.1 bits (57), Expect = 3.5
Identities = 11/31 (35%), Positives = 12/31 (38%)
Frame = +3
Query: 564 PPPXXXPXPXXPPPQXXXRPXXPXPPXXPPS 656
P P P PPP P PP PP+
Sbjct: 754 PAPIMGGPPPPPPPPGVAGAGPPPPPPPPPA 784
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +3
Query: 564 PPPXXXPXPXXPPPQXXXRPXXPXPPXXPP 653
PP P PPP P PP PP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPP 782
Score = 25.8 bits (54), Expect = 8.1
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +1
Query: 622 PXDXXPRGPPQAXPPXXPPXXXXXPPPPPP 711
P P P P P PPPPPP
Sbjct: 737 PAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.1 bits (67), Expect = 0.22
Identities = 24/77 (31%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Frame = -3
Query: 869 GXTGXXXGXGXXXRXGXXGGXXRXGGXXXXXGRGXXXWXXXRXXLPGXPRXXXGGGGGGX 690
G G G G G GG G G G + G P GGG GG
Sbjct: 196 GSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGF-GGGLGGF 254
Query: 689 XXXXGGXXGG-XAWGGP 642
GG GG GGP
Sbjct: 255 GGGPGGFGGGPGGHGGP 271
Score = 28.7 bits (61), Expect = 1.1
Identities = 22/70 (31%), Positives = 22/70 (31%), Gaps = 1/70 (1%)
Frame = -1
Query: 772 GGXXXGXXXGPXXXAXXXAXRXXGXGXXX-SXXGGNXGGXLGGXXGGXGXXGRXXXXGGG 596
GG G GP G GG GG GG G G G GGG
Sbjct: 194 GGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPG---GFGGG 250
Query: 595 XXGXGXXXGG 566
G G GG
Sbjct: 251 LGGFGGGPGG 260
Score = 25.8 bits (54), Expect = 8.1
Identities = 22/70 (31%), Positives = 23/70 (32%)
Frame = -1
Query: 775 GGGXXXGXXXGPXXXAXXXAXRXXGXGXXXSXXGGNXGGXLGGXXGGXGXXGRXXXXGGG 596
G G G GP G G GG+ G GG G G G GGG
Sbjct: 189 GFGGFGGGSGGPPPGPGGFGG-FGGFGGEGHHHGGHGG--FGGGPG--GFEGGPGGFGGG 243
Query: 595 XXGXGXXXGG 566
G G GG
Sbjct: 244 PGGFGGGLGG 253
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 30.3 bits (65), Expect = 0.38
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = -1
Query: 703 GXGXXXSXXGGNXGGXLGGXXGGXGXXGRXXXXGGGXXGXGXXXGGG 563
G G GG+ GG G GG G R GG G GG
Sbjct: 139 GRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGG 185
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.66
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +3
Query: 558 GXPPPXXXPXPXXPPPQXXXRPXXPXPPXXPPSXPPXXPPXXLSXXPXP 704
G PP P P PP +P PP PPS P P P P
Sbjct: 1187 GVPP---VPPPSEAPP--VPKPSVGVPPVPPPSTAPPVPTPSAGLPPVP 1230
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/81 (22%), Positives = 21/81 (25%)
Frame = +3
Query: 582 PXPXXPPPQXXXRPXXPXPPXXPPSXPPXXPPXXLSXXPXPXXRXAXXXAXXXGPXXXPX 761
P P PP +P PP PS P P ++ P P P
Sbjct: 1134 PVPSGAPP--VPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPV 1191
Query: 762 XXPPPXXXXXSPLAXXXPXXP 824
P P P P
Sbjct: 1192 PPPSEAPPVPKPSVGVPPVPP 1212
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/72 (26%), Positives = 19/72 (26%), Gaps = 2/72 (2%)
Frame = +3
Query: 567 PPXXXPXPXXPPPQXXXRPXXPXPPXXPPSXPPXXPPXXLSXXPXPXXRXAXXXAXXXG- 743
PP P P P P P PS PP P P A G
Sbjct: 1032 PPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGI 1091
Query: 744 -PXXXPXXXPPP 776
P P PP
Sbjct: 1092 PPVPKPSVAAPP 1103
Score = 27.5 bits (58), Expect = 2.7
Identities = 22/94 (23%), Positives = 25/94 (26%), Gaps = 5/94 (5%)
Frame = +3
Query: 438 PPPPPPLXLXXXXXXXXXXXXRAXTKPXXXXXXPXRXGXGGXPP-PXXXPXPXXPPPQXX 614
PP P P P P G PP P P P P
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVA 1100
Query: 615 X----RPXXPXPPXXPPSXPPXXPPXXLSXXPXP 704
+P PP PS P P ++ P P
Sbjct: 1101 APPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVP 1134
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/41 (31%), Positives = 16/41 (39%)
Frame = +3
Query: 582 PXPXXPPPQXXXRPXXPXPPXXPPSXPPXXPPXXLSXXPXP 704
P P PP +P PP PS P P ++ P P
Sbjct: 1115 PAPSGAPP--VPKPSVAAPPVPVPSGAPPVPKPSVAAPPVP 1153
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/30 (36%), Positives = 12/30 (40%)
Frame = +1
Query: 622 PXDXXPRGPPQAXPPXXPPXXXXXPPPPPP 711
P P PP + P P PP PPP
Sbjct: 1184 PAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 637 PRGPPQAXPPXXPPXXXXXPPPPPP 711
P PP PP PPPPPP
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Frame = +1
Query: 646 PPQAXPPXXPPXXXXXP--PPPPP 711
PP PP PP P PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +3
Query: 603 PQXXXRPXXPXPPXXPPSXPPXXPP 677
P P P P PPS PP PP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPP 29
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -2
Query: 558 PPXPPGWGGXXXXGVLXXPAXPPPPPP 478
PP PPG+ P+ PPPPPP
Sbjct: 12 PPPPPGF---------EPPSQPPPPPP 29
>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 331
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +3
Query: 564 PPPXXXPXPXXPPPQXXXRPXXPXPPXXPPSXPP 665
PP P P P P P P P P PP
Sbjct: 107 PPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPP 140
Score = 25.8 bits (54), Expect = 8.1
Identities = 16/48 (33%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Frame = +3
Query: 564 PPPXXXPXPXXPPPQXXXRPXXPXPPXXPPSXP-PXXPPXXLSXXPXP 704
P P P P P P+ P P P P P PP L P P
Sbjct: 102 PLPREPPLPNEPVPEEPLPGEPPLPDEPVPEEPLPGEPP--LPNEPVP 147
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 601 PXXXXTAPXDXXPRGPPQAXPPXXPPXXXXXPPPPPP 711
P + P P P A P P PPPPPP
Sbjct: 161 PNSMVSPPPSFQP--PSAAAPATSLPSDYNPPPPPPP 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,604,539
Number of Sequences: 5004
Number of extensions: 25419
Number of successful extensions: 525
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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