Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_B20
         (736 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...   126   4e-30
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    29   0.69 
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    25   8.5  
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S...    25   8.5  
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|...    25   8.5  
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    25   8.5  
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc...    25   8.5  
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    25   8.5  

>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score =  126 bits (303), Expect = 4e-30
 Identities = 74/203 (36%), Positives = 93/203 (45%)
 Frame = -2

Query: 732 AXAPXSXXIPXPXXPAXVPXXTXFXQVXXIPTQDFKGXYXIIXDVHXLKPGDKVGAXEAT 553
           A AP    +P        P  T F Q   IPT+  +G   I  DVH +    KVG  EAT
Sbjct: 113 AIAPLDVFVPA-GNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEAT 171

Query: 552 LXNMLNIXPXSYGLVVKQVYDSGTIFAPEILDIKPEDLRAXFQAGVANVAALSLAIGYPT 373
           L NMLNI P +YG+ V  +YD G +F+PEILD+  EDL     +  + + A+SL   YPT
Sbjct: 172 LLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPT 231

Query: 372 IASAPHSIANGFKNLLXXXXXXXXXXXXXXXIKEFIKDPSKFXXXXXXXXXXXXXXXXXX 193
           I S  HS+ N +KNL+                K F+ DPS F                  
Sbjct: 232 ILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAF--VVAAAPAAAAGGEAEA 289

Query: 192 XXXXXXXXXXXXSDDDMGFGLFD 124
                       SD+DMGFGLFD
Sbjct: 290 PAAEAAAEEEEESDEDMGFGLFD 312


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 29.1 bits (62), Expect = 0.69
 Identities = 21/69 (30%), Positives = 33/69 (47%)
 Frame = +1

Query: 262 LNELLDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLEXGTE 441
           L  L+ G S+       SSDG    + + D ++  + SWV  ++R S  IS S  E   +
Sbjct: 82  LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140

Query: 442 ILWFDVQNF 468
              FD++ F
Sbjct: 141 ---FDIEAF 146


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 153 DDDMGFGLFD 124
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
           Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 153 DDDMGFGLFD 124
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
           Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 153 DDDMGFGLFD 124
           D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109


>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 153 DDDMGFGLFD 124
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
           Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 153 DDDMGFGLFD 124
           D+DMGFGLFD
Sbjct: 100 DEDMGFGLFD 109


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 153 DDDMGFGLFD 124
           D+DMGFGLFD
Sbjct: 101 DEDMGFGLFD 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,302
Number of Sequences: 5004
Number of extensions: 28140
Number of successful extensions: 50
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)