Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_B18
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    30   2.5  
11_06_0610 - 25449085-25453284                                         28   7.6  
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996...    28   7.6  
06_01_0486 - 3455030-3455770                                           28   7.6  

>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/59 (27%), Positives = 18/59 (30%)
 Frame = +1

Query: 598 GXXPXXXXXPPXPPXXHXXRXXXXPXFQPXGRXXTXRXFXPXLXPPXAPXXPPXAPXGP 774
           G  P     PP PP  +       P +             P   PP AP  PP  P  P
Sbjct: 73  GPGPPQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPPTQP 131


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 26/103 (25%), Positives = 30/103 (29%), Gaps = 10/103 (9%)
 Frame = +3

Query: 495 PPXXHEFXXKGRPPRXXXXXXLSPXGXSSRXRG------RGXXXXPPGXSPXSAXXXPTP 656
           PP   E+     PP+       SP    S+          G    PP  +P S    PTP
Sbjct: 597 PPTPEEYTPS--PPKSTPPAEKSPPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTP 654

Query: 657 XXXXPMXPTXXAGAHXPXVXSXXXP----PXGPXXXSXSPXXP 773
                  P      H P       P    P  P   S SP  P
Sbjct: 655 ESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSPPPP 697


>10_06_0039 -
           9966744-9967535,9968241-9968482,9969021-9969223,
           9969333-9970645
          Length = 849

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/54 (29%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
 Frame = +1

Query: 607 PXXXXXPPXPPXXHXXRXXXXPXFQPX-GRXXTXRXFXPXLXPPXAPXXPPXAP 765
           P     PP PP     R      F    G     +   P   PP AP  PP  P
Sbjct: 285 PAAAAPPPAPPAPRSRRTPPRTRFSAGSGAEMNKQMASPPSNPPPAPPPPPPPP 338


>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/56 (28%), Positives = 17/56 (30%)
 Frame = +1

Query: 607 PXXXXXPPXPPXXHXXRXXXXPXFQPXGRXXTXRXFXPXLXPPXAPXXPPXAPXGP 774
           P     PP PP          P   P     T     P + PP  P  PP  P  P
Sbjct: 81  PPTPRPPPTPPYVPSPPPYVPPYIPP----PTPPYVPPYIPPPTPPYVPPPTPPSP 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,530,061
Number of Sequences: 37544
Number of extensions: 143263
Number of successful extensions: 377
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)