Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_B15
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    27   3.8  
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    26   5.0  
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    26   6.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.7  
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce...    25   8.7  

>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 290 AISAW--LAAPPYRRRPSTDISHVCSNYH 370
           A+SA+  +A P   R  S DI+ +CSN+H
Sbjct: 150 ALSAFGNVAGPELARDLSNDIAELCSNHH 178


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +1

Query: 424 YCMLFANPLRTALSAFXGWSPNTGTARIGTP 516
           Y + FA PL   L+    W P  G   +G P
Sbjct: 245 YVLCFAAPLNILLNYLLVWHPTIGFGFLGAP 275


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 126 PEVTQDPLGHYVHREARQQQRRYDVHE 206
           P +  DP+  YV+ E R+++  +  H+
Sbjct: 530 PVILYDPIHEYVNHELRKRENEFSEHK 556


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 455  VRSGFAKSI-QYKPDMAKDMKVALNDMLSNDSYYKRARYLSK 333
            +RS F KS  +Y   + K   +A  D+L+NDS  K  RY  K
Sbjct: 3412 LRSSFLKSDGEYFQVVWKSDFIAEVDVLNNDSLIKTVRYSLK 3453


>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = +3

Query: 312 HHLIAEDLRQISRTFVVTIIAQHIIQSHLHVLSHIRLVLYAF 437
           H      L  I+RTF + IIA  +     H+L  +  VL  +
Sbjct: 267 HSATTRSLLDIARTFGIWIIAMAMGMESFHLLQFLGFVLLIY 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,489
Number of Sequences: 5004
Number of extensions: 48461
Number of successful extensions: 118
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)