Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_B07
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49968-1|CAA90258.2|  499|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    28   6.3  

>Z49968-1|CAA90258.2|  499|Caenorhabditis elegans Hypothetical
           protein M110.1 protein.
          Length = 499

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 2/123 (1%)
 Frame = +3

Query: 60  GRAGLCETQRSAGVESRSRAQGF*GPPTKRLPXHSYTRRPISVRGQNPFRV--GGFPRST 233
           GR GL  T  + GV+    ++G  GPP    P  S  R+      Q+  ++  GG  R  
Sbjct: 226 GRPGLEGTPGTRGVQGERGSRGARGPPGPPGPAGSDGRKGSCAHCQSDDKLSQGGANRRP 285

Query: 234 LQPDTRRHPEDARPTGRQGDSRRPTTSVSAVRRPYHAXRAXPXVXRDTPXGQNXPAGSEX 413
            + D      + +P   +      TT+ +     Y    A   V R  P  +  P  S  
Sbjct: 286 EETDPEGEFSNQQPASYEEQPPVITTTTTETAPVYTNPPAHQPVHRSFPSAE--PRQSHK 343

Query: 414 DTP 422
           ++P
Sbjct: 344 NSP 346


>Z77658-2|CAB01156.1|  457|Caenorhabditis elegans Hypothetical
           protein F14D7.2 protein.
          Length = 457

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +1

Query: 253 ATPRTPDRRVVKAIVDDQRRRSPRYGGPTTPXGRXRXCXGIPRWGRT 393
           A P  P    ++ + D    R+P   GP+ P    R   GIP   RT
Sbjct: 125 ARPAIPPLGNLEGLTDSPTPRTPVNQGPSLPYAGGREALGIPFMDRT 171


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 656 PXPXKTPAPXXXGPGPHPXKKXPXXPPXXP 745
           P P   P P    P P P ++ P  PP  P
Sbjct: 110 PAPPPAPYPQHAVPAPAPYQQQPPPPPPPP 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,048,365
Number of Sequences: 27780
Number of extensions: 271483
Number of successful extensions: 770
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 757
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)