Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_B06
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    78   2e-15
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    33   0.032
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    29   0.70 
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   2.8  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    27   3.7  
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    26   6.5  
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    26   6.5  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    26   6.5  

>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 39/124 (31%), Positives = 70/124 (56%)
 Frame = -2

Query: 465  EKARYVMQKALNVLEKKEHVQVLVQFXXXXXXXXXXXXXXXXXXXXXAVYPQRVDVCAVY 286
            EKA  +++++L  L K EHV ++ +F                     + YP+R+D+  V 
Sbjct: 1563 EKAHGLLERSLQSLPKSEHVGIIEKFAILEFKNGDPERGRTIFEGLLSSYPKRLDLWNVL 1622

Query: 285  VDMLVKENDIERVRQVMERITSHQLPARKMKKXYKKWIEVEEKIGDEGKAEIIRQRAIEX 106
            +DM +K++D   VR++ +R+ +  L  +K K  +KKW+  E+ IGD+  AE +++RAIE 
Sbjct: 1623 IDMEMKQDDPSIVRRLFQRLLALNLSTKKAKFAFKKWLAYEKNIGDDEGAEQVKRRAIEY 1682

Query: 105  VEKA 94
            V ++
Sbjct: 1683 VSES 1686


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 33.5 bits (73), Expect = 0.032
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = -2

Query: 288 YVDMLVKENDIERVRQVMERITSHQLPARKMKKXYKKWIEVEEKIGDEGKAEIIRQR 118
           Y+  L+  ND    R + E+    ++ A + K  Y+KW++ E   GD   A  + QR
Sbjct: 515 YLSYLIAINDETNARALFEKAIP-RIAADEAKPIYQKWLDYESNYGDLNAAIALSQR 570


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1389

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -2

Query: 498  CGTACYKLNLKEKARYVMQKALNVLEKKEHVQVLV 394
            CGTA + LN  EK+    +KAL V +    V VLV
Sbjct: 1173 CGTASFFLNKLEKSLDCFEKALLVSDSNADVVVLV 1207


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1066

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = -3

Query: 677  GTKESQQKTL--EGSXADDRHFQSPLEAAGHICGHWQATGTLRASXPHAKEI 528
            G   SQ  +L  E    D  HF +PLE  G I  H+Q    LR      K +
Sbjct: 892  GNLASQMMSLGIEDESDDLTHFTAPLERYGDIVVHYQLQLLLRGELASEKRL 943


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -3

Query: 581 HWQATGTLRASXPHAKEIXKGSXKLTRCAGQPATN 477
           H   T TLR   PH     K S +  +   QPA N
Sbjct: 255 HLPFTATLRKKSPHDSTSRKASFRFVQSDQQPARN 289


>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -2

Query: 303 DVCAVYVDMLVKENDIERVRQVMERITSHQLPARKMKK 190
           DVC  +VD+ V+ +   R        T H+  AR+ K+
Sbjct: 319 DVCEYHVDLAVQRSMSTRTEFASSMATMHEPRARREKR 356


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 212 NWWDVMRSITCLTRSISFSLTSISTYTAHTST 307
           +WWDV+  I   T  +S +L S +T T  T +
Sbjct: 355 DWWDVLCDIDNQTIQVSSNLFSDATTTMDTKS 386


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/49 (22%), Positives = 25/49 (51%)
 Frame = -1

Query: 568 QELSALVDLMLRKYXRDPXNLHAVRDSLLQTESQRESEIRYAEGLERFG 422
           +EL  ++  +L K+     N H ++ SL +   + +  ++  + L R+G
Sbjct: 434 EELPKILTTILNKFETIEWNTHEIQISLKEIAMEHQMPLKKIQSLLRYG 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,383
Number of Sequences: 5004
Number of extensions: 36564
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)