Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_B06
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical pr...    66   2e-11
Z68315-7|CAA92672.1|  735|Caenorhabditis elegans Hypothetical pr...    37   0.013
U23830-1|AAB01508.1|  730|Caenorhabditis elegans suf-1 protein.        37   0.013
L39893-1|AAA62311.1|  735|Caenorhabditis elegans cleavage stimul...    37   0.013
Z78198-7|CAB01573.1|  622|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U56965-9|AAB52662.2|  265|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>U41534-7|AAB47599.3| 1743|Caenorhabditis elegans Hypothetical protein
            C16A3.3 protein.
          Length = 1743

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
 Frame = -2

Query: 513  KTYTLCGTACYKLNLKEKARYVMQKALNVLEK-KEHVQVLVQFXXXXXXXXXXXXXXXXX 337
            + +TL        N ++ AR ++ +AL    K ++HVQ++ +F                 
Sbjct: 1594 EVWTLLAEHLMTQNDQKAARELLPRALKSAPKAQQHVQLISKFAQLEFKHGDAERGRTLL 1653

Query: 336  XXXXAVYPQRVDVCAVYVDMLVKENDIERVRQVMERITSHQLPARKMKKXYKKWIEVEEK 157
                  +P++ D+  VY + ++K   IE  R+V+ER  +      KM+  YKKW+E+E K
Sbjct: 1654 EGLVTAHPKKTDLWLVYAEAVLKHLGIEHARKVLERACNLGFSIHKMRPLYKKWLEMESK 1713

Query: 156  IGDEGKAEIIRQRA 115
             GD    E+++ +A
Sbjct: 1714 HGDAAAVELVKAKA 1727


>Z68315-7|CAA92672.1|  735|Caenorhabditis elegans Hypothetical
           protein F28C6.6 protein.
          Length = 735

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
 Frame = -2

Query: 318 YPQRVDVCAVYVDMLVKENDIERVRQVMERI-TSHQLPARKMKKXYKKWIEVEEKIGDEG 142
           Y    +    Y D L   N+    R V ERI TS +LPA K  + + ++++ E  +GD  
Sbjct: 428 YENEPEFGLAYADFLSNLNEDNNTRVVFERILTSSKLPADKSIRIWDRFLDFESCVGDLA 487

Query: 141 ---KAEIIRQRAIEXVEKAKF*SINFIVLLI 58
              K E  R+ A E  +K +  ++N  +L+I
Sbjct: 488 SILKVEKRRKTAYEEAQKDQ--TMNHSMLVI 516


>U23830-1|AAB01508.1|  730|Caenorhabditis elegans suf-1 protein.
          Length = 730

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
 Frame = -2

Query: 318 YPQRVDVCAVYVDMLVKENDIERVRQVMERI-TSHQLPARKMKKXYKKWIEVEEKIGDEG 142
           Y    +    Y D L   N+    R V ERI TS +LPA K  + + ++++ E  +GD  
Sbjct: 423 YENEPEFGLAYADFLSNLNEDNNTRVVFERILTSSKLPADKSIRIWDRFLDFESCVGDLA 482

Query: 141 ---KAEIIRQRAIEXVEKAKF*SINFIVLLI 58
              K E  R+ A E  +K +  ++N  +L+I
Sbjct: 483 SILKVEKRRKTAYEEAQKDQ--TMNHSMLVI 511


>L39893-1|AAA62311.1|  735|Caenorhabditis elegans cleavage
           stimulation factor protein.
          Length = 735

 Score = 37.1 bits (82), Expect = 0.013
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
 Frame = -2

Query: 318 YPQRVDVCAVYVDMLVKENDIERVRQVMERI-TSHQLPARKMKKXYKKWIEVEEKIGDEG 142
           Y    +    Y D L   N+    R V ERI TS +LPA K  + + ++++ E  +GD  
Sbjct: 428 YENEPEFGLAYADFLSNLNEDNNTRVVFERILTSSKLPADKSIRIWDRFLDFESCVGDLA 487

Query: 141 ---KAEIIRQRAIEXVEKAKF*SINFIVLLI 58
              K E  R+ A E  +K +  ++N  +L+I
Sbjct: 488 SILKVEKRRKTAYEEAQKDQ--TMNHSMLVI 516


>Z78198-7|CAB01573.1|  622|Caenorhabditis elegans Hypothetical
           protein F55C5.8 protein.
          Length = 622

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 258 IERVRQVMERITSHQLPARKMKKXYKKWIEVE 163
           +ER+R+ ++   SH    ++  K  KKW+ VE
Sbjct: 51  LERMRKALKFTNSHNCQKKRKAKFVKKWLSVE 82


>U56965-9|AAB52662.2|  265|Caenorhabditis elegans Hypothetical
           protein C15H9.2 protein.
          Length = 265

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -2

Query: 507 YTLCGTACYKLNLKEKARYVMQKALNVLEKK 415
           Y LC   CY +   +K  + ++  LN L+ K
Sbjct: 220 YNLCNDTCYNIRSTQKMEWAIRYNLNTLKNK 250


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,603,472
Number of Sequences: 27780
Number of extensions: 215843
Number of successful extensions: 748
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)