Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_B04
         (1208 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   6.9  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   6.9  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = -1

Query: 1208 GGXGGFXGG-GXXWGGFGFXXGG 1143
            GG GGF GG G   GG G   GG
Sbjct: 235  GGPGGFGGGPGGFGGGLGGFGGG 257


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 500

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 1208 GGXGGFXGGGXXWGGFGFXXGG 1143
            GG GGF G G   GG G   GG
Sbjct: 457  GGRGGFGGRGGFGGGRGRGRGG 478


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.304    0.132    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,749,253
Number of Sequences: 5004
Number of extensions: 17678
Number of successful extensions: 45
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 653435696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)