Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_B04
         (1208 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   3.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 13/41 (31%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
 Frame = +3

Query: 384 PHWSXXKPNX--TXNPSXXPPPGXXDXPHPQHXTNKAQXXP 500
           PH S   P      NPS  PPPG      P    ++    P
Sbjct: 27  PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = +1

Query: 1144 PPXXNPNPPHXXPPPXNPP 1200
            P   +P  P   PPP  PP
Sbjct: 34   PQRGSPPNPSQGPPPGGPP 52



 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 783 PHPXHHXXPXHHQXXHPPXPPQ 848
           P P  H  P   Q   PP P Q
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQ 44


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/26 (38%), Positives = 10/26 (38%)
 Frame = +3

Query: 768 PXKHPPHPXHHXXPXHHQXXHPPXPP 845
           P   PPH  HH      Q  H   PP
Sbjct: 345 PTMGPPHHHHHHQTQSLQHLHYRQPP 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.304    0.132    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,991
Number of Sequences: 438
Number of extensions: 3109
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41331843
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.8 bits)