Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_B02
         (1248 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical pr...    31   2.2  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    29   9.1  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    29   9.1  
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ...    29   9.1  

>Z84574-5|CAB06541.1|  846|Caenorhabditis elegans Hypothetical
           protein F33E2.6 protein.
          Length = 846

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = +3

Query: 492 TQEQKKKEPXQTNPXPXTPXPXXPPRQNXTXPXXPKXTP 608
           T E  K EP +T P    P P  PP+        PK  P
Sbjct: 384 TTEPPKIEPPRTEPPKTEPPPTEPPKTEPPKTTPPKTEP 422



 Score = 28.7 bits (61), Expect = 9.1
 Identities = 14/56 (25%), Positives = 17/56 (30%)
 Frame = +3

Query: 498 EQKKKEPXQTNPXPXTPXPXXPPRQNXTXPXXPKXTPAXXXXXXXXDXTXXXPXPP 665
           E  + EP +T P P  P    PP+        P   P               P PP
Sbjct: 391 EPPRTEPPKTEPPPTEPPKTEPPKTTPPKTEPPTTEPPNIPYCWQQQSRLFAPSPP 446


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 16/56 (28%), Positives = 16/56 (28%)
 Frame = +3

Query: 516 PXQTNPXPXTPXPXXPPRQNXTXPXXPKXTPAXXXXXXXXDXTXXXPXPPXXPQXP 683
           P Q  P P  P P  PP      P  P    A                PP  PQ P
Sbjct: 127 PYQQQPPPPPPPPHYPPPPPHYPPPPPAPHSAYIDHSAPRPAYIEHSAPPPQPQYP 182


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 21/69 (30%), Positives = 23/69 (33%)
 Frame = +3

Query: 525 TNPXPXTPXPXXPPRQNXTXPXXPKXTPAXXXXXXXXDXTXXXPXPPXXPQXPTXEKNPX 704
           T P P TP P  PP      P  P   PA        + +   P PP  P   T    P 
Sbjct: 464 TTP-PTTPKPAPPPPSRIPNPS-PSPQPA--------EVSKSPPPPPPLPPIATPSSVPP 513

Query: 705 XTXPPQKXP 731
              PP   P
Sbjct: 514 PPPPPPPPP 522


>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
           protein F52G3.1 protein.
          Length = 1172

 Score = 28.7 bits (61), Expect = 9.1
 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = +3

Query: 474 RRGXXGTQEQKKKEPXQTNPXPXT-PXPXXPPRQNXTXPXXPKXTPA 611
           + G    +E+  KE  QT P P   P P   P    T P   K TPA
Sbjct: 364 KEGKSSKKEKDVKEKKQTVPPPNPGPAPAPAPIAIDTPPASEKTTPA 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,479,036
Number of Sequences: 27780
Number of extensions: 72599
Number of successful extensions: 305
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3464240056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)