Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_B01
         (820 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            25   3.7  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    25   3.7  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 10/28 (35%), Positives = 10/28 (35%)
 Frame = +1

Query: 592 PNPXXTPXPPXTPXKXPXPPPXTXXTXG 675
           PN    P PP  P   P P P      G
Sbjct: 577 PNAQPPPAPPPPPPMGPPPSPLAGGPLG 604



 Score = 23.4 bits (48), Expect = 8.6
 Identities = 11/39 (28%), Positives = 13/39 (33%)
 Frame = +1

Query: 592 PNPXXTPXPPXTPXKXPXPPPXTXXTXGXAPXPXKXKRP 708
           PN      PP  P   P  PP +    G    P   + P
Sbjct: 574 PNLPNAQPPPAPPPPPPMGPPPSPLAGGPLGGPAGSRPP 612


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 12/41 (29%), Positives = 14/41 (34%)
 Frame = +2

Query: 353 PPGXXPPXPXRXPXXXXXHQGTTXNGGAXRXTNXTPXPGXP 475
           PP   PP P   P      Q +  +GG        P P  P
Sbjct: 263 PPPIRPPNPMGGPRPQISPQNSNLSGGMPSGMVGPPRPPMP 303



 Score = 23.4 bits (48), Expect = 8.6
 Identities = 12/44 (27%), Positives = 15/44 (34%)
 Frame = +1

Query: 559 PKXPXXPKTXAPNPXXTPXPPXTPXKXPXPPPXTXXTXGXAPXP 690
           P+      + AP P   P  P +    P   P    T   AP P
Sbjct: 75  PQPTVLAASPAPQPSLAPVVPSSVVTAPPARPSQPPTTRFAPEP 118



 Score = 23.4 bits (48), Expect = 8.6
 Identities = 15/56 (26%), Positives = 16/56 (28%)
 Frame = +1

Query: 553 PXPKXPXXPKTXAPNPXXTPXPPXTPXKXPXPPPXTXXTXGXAPXPXKXKRPAKPP 720
           P P  P  P+     P     PP T       PP         P      RP  PP
Sbjct: 181 PNPGMPPGPQMM--RPPGNVGPPRTGTPTQPQPPRPGGMYPQPPGVPMPMRPQMPP 234


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.306    0.127    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,202
Number of Sequences: 2352
Number of extensions: 5207
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 86902827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)