Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_A23
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    29   0.55 
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    27   2.9  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   5.1  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    25   8.9  

>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 335 PPNADLSKPPDPERWLPKYERT 270
           P + +    PDP+RW+PK +RT
Sbjct: 524 PKSFNPKATPDPQRWIPKRDRT 545


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 211 DIPWLPLMTSRLMPRRFLYAVRSYFGNHLSGSGG 312
           D+PW P   SR+  +    A RS FG +++   G
Sbjct: 140 DLPWTPTQLSRIARQGSGSACRSLFGGYVAWEMG 173


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 23/92 (25%), Positives = 37/92 (40%)
 Frame = -2

Query: 481 LTPWNRRDG*WELKSSRRLFKASRNNLPELPALSWDRRRKRNASATANSRRTQTSPNLPI 302
           L P N++     +KSS  L KAS+  + +L A         +A  + N+    TS N+ +
Sbjct: 514 LNPVNQKSHSPAIKSSSTLRKASKTRIVDLSA-------PNSAVFSKNASGGDTSSNVSL 566

Query: 301 RKGGCQSTSELRTESDEALDVTSSRVAKECPP 206
             G         TES +        + +E  P
Sbjct: 567 LNGSASEEIPQNTESGQVFRKKIEMLRQEAGP 598


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 19/68 (27%), Positives = 25/68 (36%)
 Frame = -2

Query: 490 KSILTPWNRRDG*WELKSSRRLFKASRNNLPELPALSWDRRRKRNASATANSRRTQTSPN 311
           K IL  WNRR+G    ++       ++  LP               SAT  S   +T P 
Sbjct: 162 KEILAEWNRREGALVAENPHSTHVMAQ--LPNASYAFAGILADEKLSATVASEGARTIPG 219

Query: 310 LPIRKGGC 287
            P   G C
Sbjct: 220 RPENGGNC 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,743
Number of Sequences: 5004
Number of extensions: 30160
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)