Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_A09
         (984 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.11 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   1.0  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   5.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   5.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = +2

Query: 395 PPPKKXPPXFXXXXGGXXFXPPPPPPPXXXGGG 493
           PPP   PP       G    PPPPPPP    GG
Sbjct: 761 PPPPPPPPGV----AGAGPPPPPPPPPAVSAGG 789



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 15/39 (38%), Positives = 15/39 (38%)
 Frame = -1

Query: 528 PPPXXIXXXHPXPPPXXXGGGGGGGXXKXPPXXXXKXGG 412
           PPP  I    P PPP   G  G G     PP      GG
Sbjct: 752 PPPAPIMGGPPPPPPP-PGVAGAGPPPPPPPPPAVSAGG 789



 Score = 29.1 bits (62), Expect = 1.0
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +3

Query: 375 PLFXGXSPPQKXXPPXFXXXGXGXXFXPPPPPPPXXXGGG 494
           P+  G  PP    PP     G G    PPPPPPP     G
Sbjct: 756 PIMGGPPPP----PPPPGVAGAGP---PPPPPPPPAVSAG 788



 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = +1

Query: 373 PPFXXVXPPPKKXPPXFXXXXGXVFXXXPPPPPPXXXGGGGG 498
           PP   +  PP   PP      G      PPPPPP      GG
Sbjct: 753 PPAPIMGGPPPPPPPP-----GVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 13/41 (31%), Positives = 14/41 (34%)
 Frame = +1

Query: 373 PPFXXVXPPPKKXPPXFXXXXGXVFXXXPPPPPPXXXGGGG 495
           PP   V  P     P        +    PPPPPP    G G
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAG 774


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 16/63 (25%), Positives = 17/63 (26%)
 Frame = +2

Query: 413 PPXFXXXXGGXXFXPPPPPPPXXXGGGXGXXXXXXXGGGXXXXXXXXXXPPPPXFFFXXP 592
           PP +          PPPPPPP                            PPPP      P
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPMPSRNVNNLGSQVNIPPPPATPSQPP 283

Query: 593 PPP 601
            PP
Sbjct: 284 RPP 286



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
 Frame = +2

Query: 395 PPPKKXPPXFXXXXGGXX--FXPPPPPPP 475
           PPP   PP            + PPPPPPP
Sbjct: 167 PPPSFQPPSAAAPATSLPSDYNPPPPPPP 195


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +3

Query: 396 PPQKXXPPXFXXXGXGXXFXPPPPPPP 476
           PP    PP     G      PPPPPPP
Sbjct: 5   PPGNPPPPP-PPPGFEPPSQPPPPPPP 30


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 449 FXPPPPPPPXXXGGGXG 499
           F PPPPPPP       G
Sbjct: 944 FPPPPPPPPPLVSAAGG 960



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 445 FXXXPPPPPPXXXGGGG 495
           F   PPPPPP     GG
Sbjct: 944 FPPPPPPPPPLVSAAGG 960


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,849,851
Number of Sequences: 5004
Number of extensions: 35436
Number of successful extensions: 277
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 507285244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)