Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_A07
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       29   0.037
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   1.1  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    23   4.3  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    23   4.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.5  
AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.           21   9.9  
AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.           21   9.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 0.037
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -1

Query: 760 NPXXPPEGTPPXPXXPPPPXTPTRXP 683
           +P  P  G+PP P   PPP  P   P
Sbjct: 30  SPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 23.4 bits (48), Expect = 2.5
 Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
 Frame = -2

Query: 780 PXXTRXXTPXXPXK-EPPXXXXPPXPRXPPPXPP 682
           P  +   +P  P +  PP     P P  PP  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = -1

Query: 736 TPPXPXXPPPP 704
           TPP P  PPPP
Sbjct: 337 TPPKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 717 PPXPRXPPPXP 685
           PP P  PPP P
Sbjct: 338 PPKPAPPPPPP 348


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 635 GGXXXFGGLGGXXXXP 682
           GG   FGGLGG    P
Sbjct: 23  GGFGGFGGLGGRGKCP 38


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 635 GGXXXFGGLGGXXXXP 682
           GG   FGGLGG    P
Sbjct: 23  GGFGGFGGLGGRGKCP 38


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 4   FFFFLRLHSDLEW 42
           F+FF+ + S+L W
Sbjct: 86  FYFFMSMRSELPW 98


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = -3

Query: 740  RNPPXPXXPPXPEXPHPXPXXXXXPPPXPR 651
            R P      P PE P   P     P P  R
Sbjct: 1355 RGPSASGGRPVPERPERVPTVDLSPSPSDR 1384


>AY703618-1|AAU12614.1|  136|Apis mellifera wingless protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = -2

Query: 717 PPXPRXPPPXPPGXXXXPPXPPKXKXPPE 631
           P  P   PP P       P PP  +  P+
Sbjct: 64  PYNPEHKPPGPKDLVYLEPSPPFCEKNPK 92


>AY222546-1|AAP69221.1|  135|Apis mellifera wingless protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = -2

Query: 717 PPXPRXPPPXPPGXXXXPPXPPKXKXPPE 631
           P  P   PP P       P PP  +  P+
Sbjct: 65  PYNPEHKPPGPKDLVYLEPSPPFCEKNPK 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,488
Number of Sequences: 438
Number of extensions: 5024
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)