Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_A05
         (947 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0486 - 3455030-3455770                                           32   0.77 
05_04_0419 + 21103418-21103597,21103768-21103931,21104420-21104846     29   5.4  

>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 31.9 bits (69), Expect = 0.77
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
 Frame = +1

Query: 298 GGXXHQKTXRPAQGGGRXPXTTPXXTHDXRPPXQXTPXAPNXPXN--XPKQPPRXPHTXA 471
           GG  H K      GGG      P   H  +PP      + + P     P+ PP  P+  +
Sbjct: 36  GGGHHGKPPGSGSGGGGHHGKPPEHHHHHKPPPSPRCPSCHPPYTPPTPRPPPTPPYVPS 95

Query: 472 XP 477
            P
Sbjct: 96  PP 97


>05_04_0419 + 21103418-21103597,21103768-21103931,21104420-21104846
          Length = 256

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = +1

Query: 352 PXTTPXXTHDXRPPXQXTPXAPNXPXNXPKQPPRXPHTXAXP 477
           P  TP   H  RPP    P  P    N P  PP  P     P
Sbjct: 190 PIGTPIDIHGFRPPMPPNPQVPEPLPNYP-PPPYSPAPAPAP 230


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.304    0.125    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,661,420
Number of Sequences: 37544
Number of extensions: 103985
Number of successful extensions: 311
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2729534420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)