Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_A04
         (1132 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1125 + 31085106-31085714                                         30   3.9  
11_06_0610 - 25449085-25453284                                         29   6.8  
12_02_1174 - 26696869-26698191                                         29   9.0  

>04_04_1125 + 31085106-31085714
          Length = 202

 Score = 29.9 bits (64), Expect = 3.9
 Identities = 18/60 (30%), Positives = 20/60 (33%)
 Frame = +3

Query: 546 PPGATPDARTXXTPKNPXSPXXKAXPXPXEPSPAXXTXXXPXXXXXAKARAXXXXHTXPP 725
           PP   P   T  TP  P +P     P P  P+P   T   P         A     T PP
Sbjct: 41  PPPCQPPPPTP-TPATPTTPPTPWTPPPATPTPPTPTPWTPTPATPPPTPATPATPTTPP 99


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 29.1 bits (62), Expect = 6.8
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +3

Query: 492 PKQKXXXTPXXKXGXQNXPPGATPDARTXXTPKNPXSPXXKAXPXPXEPS 641
           P +K   TP  K    + PP  TP+  T   PK+   P  K+ P P   S
Sbjct: 646 PSEKSPPTPESKA---SSPPPPTPEGHTPSPPKS-TPPTEKSPPTPESES 691


>12_02_1174 - 26696869-26698191
          Length = 440

 Score = 28.7 bits (61), Expect = 9.0
 Identities = 16/56 (28%), Positives = 19/56 (33%)
 Frame = +3

Query: 558 TPDARTXXTPKNPXSPXXKAXPXPXEPSPAXXTXXXPXXXXXAKARAXXXXHTXPP 725
           +P A T   P  P  P     P P +PS    T         AK  A     + PP
Sbjct: 282 SPTAVTPPEPTKPKPPPPSPPPPPQQPSQRYWTPPPAITPEPAKPAAGKPTSSSPP 337


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.308    0.130    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,728,011
Number of Sequences: 37544
Number of extensions: 187498
Number of successful extensions: 288
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3421418428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)