Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_T7_A03
(890 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.13
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.29
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 29 0.67
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.7
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 3.6
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 27 4.7
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.9 bits (69), Expect = 0.13
Identities = 16/51 (31%), Positives = 17/51 (33%), Gaps = 2/51 (3%)
Frame = +1
Query: 622 PXPPPKQRXPXXXKXXXPPPXPPXRKXXPPXTPK--XPPXXAPLTXPXXXP 768
P PPP + P PP PP P TP PP P P
Sbjct: 1190 PVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Score = 29.1 bits (62), Expect = 0.89
Identities = 15/50 (30%), Positives = 16/50 (32%)
Frame = +1
Query: 622 PXPPPKQRXPXXXKXXXPPPXPPXRKXXPPXTPKXPPXXAPLTXPXXXPP 771
P P P P PP P PP PK P+ P PP
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGIPP-VPKPAAGVPPVPPPSEAPP 1199
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 3/53 (5%)
Frame = +1
Query: 622 PXPPPKQRXPXXXKXXXP-PPXPPXRKXXPPXTPKX--PPXXAPLTXPXXXPP 771
P P P P K PP PP + P P PP P T P P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.29
Identities = 18/66 (27%), Positives = 19/66 (28%)
Frame = +1
Query: 622 PXPPPKQRXPXXXKXXXPPPXPPXRKXXPPXTPKXPPXXAPLTXPXXXPPXTXXXHXXRX 801
P PPP P P P P PP P P P PP R
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRY 792
Query: 802 XPXAPR 819
AP+
Sbjct: 793 YAPAPQ 798
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 29.5 bits (63), Expect = 0.67
Identities = 18/65 (27%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Frame = +1
Query: 628 PPPKQRXPXXXKXXXPPPXPPXRKXXPPXTP-KXPPXXAPL-TXPXXXPPXTXXXHXXRX 801
PP P PP P R PP +P PP + P PP +
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKS 183
Query: 802 XPXAP 816
P AP
Sbjct: 184 PPSAP 188
Score = 29.1 bits (62), Expect = 0.89
Identities = 13/48 (27%), Positives = 15/48 (31%)
Frame = +1
Query: 628 PPPKQRXPXXXKXXXPPPXPPXRKXXPPXTPKXPPXXAPLTXPXXXPP 771
PP + P PP P PP P P P+ PP
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/45 (28%), Positives = 15/45 (33%)
Frame = +1
Query: 622 PXPPPKQRXPXXXKXXXPPPXPPXRKXXPPXTPKXPPXXAPLTXP 756
P P + P P PP PP K PP + L P
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 673 PPPXPPXRKXXPPXTPKXPP 732
PPP PP PP P PP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPP 28
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/47 (25%), Positives = 16/47 (34%)
Frame = +1
Query: 628 PPPKQRXPXXXKXXXPPPXPPXRKXXPPXTPKXPPXXAPLTXPXXXP 768
PP + + + P P PP PP + P P P P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/50 (26%), Positives = 15/50 (30%)
Frame = +1
Query: 619 QPXPPPKQRXPXXXKXXXPPPXPPXRKXXPPXTPKXPPXXAPLTXPXXXP 768
Q PP+ P P PP P P PP P + P
Sbjct: 1695 QSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.1 bits (57), Expect = 3.6
Identities = 15/45 (33%), Positives = 16/45 (35%)
Frame = +1
Query: 622 PXPPPKQRXPXXXKXXXPPPXPPXRKXXPPXTPKXPPXXAPLTXP 756
P P P P PP PP P P PP AP+ P
Sbjct: 416 PVPTPPS-LPPSAPPSLPPSAPPSLPMGAPAAPPLPP-SAPIAPP 458
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/41 (31%), Positives = 15/41 (36%)
Frame = +1
Query: 619 QPXPPPKQRXPXXXKXXXPPPXPPXRKXXPPXTPKXPPXXA 741
QP PPP Q+ PP + PP PP A
Sbjct: 205 QPPPPPPQQNYPPAASSSAPPMQYQQTAYPPQQAPYPPVQA 245
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.139 0.476
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,900,029
Number of Sequences: 5004
Number of extensions: 22765
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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