Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_A02
         (1113 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex sub...    28   2.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   4.7  
SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    26   8.2  

>SPBC16C6.08c |qcr6||ubiquinol-cytochrome-c reductase complex
           subunit 8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 214

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 12/52 (23%), Positives = 20/52 (38%)
 Frame = +1

Query: 253 PXXXXKXPPXPDEREKXXGXRPXXPKXKNPTXPQSGAPXKKPXQXKXXXHNP 408
           P      PP P+E+E      P  P  +    PQ G   ++  + +    +P
Sbjct: 98  PEEVKTEPPQPEEKEGKEAKEPEEPPKEEAEEPQEGGEEEEEEEEEEEITDP 149


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
 Frame = +1

Query: 610 RXRPPXPXPXXTPXTPXRPEN-PKXRXPTNPHQPXPKKNXXTKPXTP 747
           R  PP P P   P T  +P      R  +NP  P P     + P  P
Sbjct: 358 RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALP 404


>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 664 PENPKXRXPTNPHQPXPKKNXXTKPXTP 747
           PE P  R P  P++P P++    +P  P
Sbjct: 99  PEEPLPREPPLPNEPVPEEPLPGEPPLP 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.307    0.133    0.438 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,686,836
Number of Sequences: 5004
Number of extensions: 15715
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 589685872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)