Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_A01
         (1206 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.24 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   6.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   6.9  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   6.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   9.1  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 31.5 bits (68), Expect = 0.24
 Identities = 28/109 (25%), Positives = 30/109 (27%), Gaps = 3/109 (2%)
 Frame = +1

Query: 637  PXXXXXPPRPXSXGGXAXPXGXXPXRXPLXLPXXGAXGXXXPPPSKGXXPSPXPGXXAPX 816
            P     PP P      A P    P   P  +P         P PS G  P P P    P 
Sbjct: 1134 PVPSGAPPVPKP--SVAAPPVPAPSGAP-PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPP 1190

Query: 817  XXPPXXPXXPXXXXXGXXXXPGXPXSPRXRPXXXXXFPP---PXXXGPP 954
              PP           G    P    +P   P      PP   P    PP
Sbjct: 1191 VPPPSEAPPVPKPSVGVPPVPPPSTAPPV-PTPSAGLPPVPVPTAKAPP 1238


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 13/48 (27%), Positives = 14/48 (29%)
 Frame = -1

Query: 282  PXKNXXXXPXPXXTXXPXXXXXPPXTXXXPXXPXPXPPXXQXPPXPXP 139
            P +     P P     P     PP     P  P P  P    P  P P
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 21/63 (33%), Positives = 21/63 (33%)
 Frame = +1

Query: 658 PRPXSXGGXAXPXGXXPXRXPLXLPXXGAXGXXXPPPSKGXXPSPXPGXXAPXXXPPXXP 837
           P P S    A P    P   P  LP  GA      PPS    P    G  A    PP  P
Sbjct: 418 PTPPSLPPSAPPS--LPPSAPPSLPM-GAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAP 474

Query: 838 XXP 846
             P
Sbjct: 475 APP 477


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 15/50 (30%), Positives = 15/50 (30%)
 Frame = -2

Query: 296 PPXXXPXKTXXXPXXPXPPXXPXXXXNXPXPXXXPRXXXXXPQXPKXPPP 147
           PP      T      P PP  P      P P   P      P  P  PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAP-IMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +1

Query: 763 PPSKGXXPSPXPGXXAPXXXPPXXP 837
           PP     P P PG   P   PP  P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.156    0.552 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,821,120
Number of Sequences: 5004
Number of extensions: 18469
Number of successful extensions: 68
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 651443514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)