Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_T7_A01
         (1206 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    24   3.1  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    24   3.1  

>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 147 GXGGFGXLGGXG 182
           G GGFG LGG G
Sbjct: 24  GFGGFGGLGGRG 35



 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 147 GXGGFGXLGGXG 182
           G GGFG  GG G
Sbjct: 21  GFGGFGGFGGLG 32


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 147 GXGGFGXLGGXG 182
           G GGFG LGG G
Sbjct: 24  GFGGFGGLGGRG 35



 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +3

Query: 147 GXGGFGXLGGXG 182
           G GGFG  GG G
Sbjct: 21  GFGGFGGFGGLG 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.311    0.156    0.552 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,964
Number of Sequences: 438
Number of extensions: 4589
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 41211342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)