Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP15_FL5_P15
(1059 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.022
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.63
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.83
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.5
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 27 5.9
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.7 bits (76), Expect = 0.022
Identities = 15/37 (40%), Positives = 15/37 (40%)
Frame = +1
Query: 619 PXAPPXGGGGXXPPPPPXXXXXKXXPPPXXPPXGGGG 729
P P GG PPPPP PPP PP G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 34.3 bits (75), Expect = 0.029
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +1
Query: 619 PXAPPXG-GGGXXPPPPPXXXXXKXXPPPXXPPXGGGGXGXAXXXP 753
P PP GG PPPPP PPP PP G P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/51 (31%), Positives = 17/51 (33%)
Frame = +2
Query: 167 PPPXXPXXXXXXXXXXXXXNPQXLXGAPPXXXXNPPPPPKXXXKXGGXPPP 319
PPP P + G PP PPPPP G PPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPP-----PPPPPPGVAGAGPPPPP 779
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/48 (29%), Positives = 14/48 (29%)
Frame = +3
Query: 657 PPPPPXGXXKXXXXXXXXXXXXXXXGXXPPXPPXXXXXXGGGXXXPPP 800
PPPPP PP PP G G PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +1
Query: 655 PPPPPXXXXXKXXPPPXXPPXGGGGXGXAXXXPXLXXXXXGG 780
P P P PPP PP G G G P GG
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Score = 26.2 bits (55), Expect = 7.8
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -2
Query: 470 PPPPXXXKGXPPXFXPAGGGGXXPP 396
PPP G PP P G G PP
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPP 776
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.63
Identities = 11/24 (45%), Positives = 11/24 (45%)
Frame = +1
Query: 643 GGXXPPPPPXXXXXKXXPPPXXPP 714
G PPPPP PPP PP
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPP 30
Score = 28.7 bits (61), Expect = 1.5
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 646 GXXPPPPPXXXXXKXXPPPXXPPXG 720
G PPPPP PP PP G
Sbjct: 7 GNPPPPPPPPGFEPPSQPPPPPPPG 31
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.83
Identities = 23/93 (24%), Positives = 23/93 (24%), Gaps = 1/93 (1%)
Frame = +3
Query: 630 PPXGGGGXXPPPPPXGXXKXXXXXXXXXXXXXXXGXXPPXPPXXXXXXG-GGXXXPPPXX 806
PP G P PP G P PP G PP
Sbjct: 392 PPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPP 451
Query: 807 XXPXXXPGGXPXPXXKXXXPAXPXPPRXPTXPP 905
P P P PA P PP P P
Sbjct: 452 SAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAP 484
Score = 27.1 bits (57), Expect = 4.5
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 269 PPPPPKXXXKXGGXPPP 319
PPPPP+ G PPP
Sbjct: 362 PPPPPRSAPSTGRQPPP 378
Score = 26.6 bits (56), Expect = 5.9
Identities = 24/107 (22%), Positives = 25/107 (23%), Gaps = 5/107 (4%)
Frame = +3
Query: 657 PPPPPXGXXKXXXXXXXXXXXXXXXGXXPPXPPXXXXXXGGGXXXPP-----PXXXXPXX 821
PPPPP + PP PP G PP P P
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSN--SSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRS 368
Query: 822 XPGGXPXPXXKXXXPAXPXPPRXPTXPPXXXXPXXXXXGXXGXPXXP 962
P P A PP P P P G P
Sbjct: 369 APSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTP 415
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.5
Identities = 26/113 (23%), Positives = 26/113 (23%), Gaps = 1/113 (0%)
Frame = +3
Query: 648 GXXPPPPPXGXXKXXXXXXXXXXXXXXXGXXPPXPPXXXXXXGGGXXXPPPXXXXPXXXP 827
G P P P G PP P G P P P
Sbjct: 1081 GAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPS----GAPPVPKPSVAAPPVPVP 1136
Query: 828 GGXPX-PXXKXXXPAXPXPPRXPTXPPXXXXPXXXXXGXXGXPXXPLXAXGXP 983
G P P P P P P P G P P A G P
Sbjct: 1137 SGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVP 1189
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 26.6 bits (56), Expect = 5.9
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -1
Query: 315 GGXPPXFXXXLGGGGGFXXXXGGAPXXFWG 226
GG P F LGG GG GG P G
Sbjct: 241 GGGPGGFGGGLGGFGGGPGGFGGGPGGHGG 270
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,001
Number of Sequences: 5004
Number of extensions: 39555
Number of successful extensions: 268
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 557214894
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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