Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP15_FL5_P13
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...   130   2e-31
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    27   4.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   4.0  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    26   7.0  
SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces...    25   9.3  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    25   9.3  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score =  130 bits (315), Expect = 2e-31
 Identities = 81/208 (38%), Positives = 112/208 (53%), Gaps = 1/208 (0%)
 Frame = +1

Query: 166 RLQALRALMSSQRPVLAAYITPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQAL 345
           RL  LR LM  +   L  Y+ P+ DAH+SEY   ADARR +IS F GSAG AV+  + A 
Sbjct: 8   RLNKLRELMKERGYTL--YVVPSEDAHSSEYTCDADARRAFISGFDGSAGCAVIGETSAA 65

Query: 346 VWTDGRYYTQFEREVDLSAWTLMKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMTRDEWT 525
           ++TDGRY+ Q  +++D   WTLMKQ     PT E++     K  + VG+D   +T     
Sbjct: 66  LFTDGRYFNQASQQLD-ENWTLMKQGFTGVPTWEEYCTQMTKCNEKVGIDSSLITFPAAK 124

Query: 526 PIQTAL-KKISAQLVPISNNLVDDVRIELGDPAPKRSHNELAPLHVRYTGRTAGEKIAEL 702
            ++ +L  K  A LV   +NLVD   I  G   PK    +L    ++Y G    EK+  L
Sbjct: 125 ALRESLFLKSGAVLVGDHDNLVD---IVWGASRPKEPLEKLIVQEIKYAGLGVDEKLHNL 181

Query: 703 RRKMAEXKASALVLTGLXDIAYXLNLXG 786
           R  M E K  A V++ L ++A+  NL G
Sbjct: 182 REAMKEQKIEAFVVSMLDEVAWLYNLRG 209


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +1

Query: 319 AVVTSSQALVWTDGRYYTQFEREVDL 396
           AV T +  ++WT G Y+   ++E+++
Sbjct: 317 AVSTENSVMLWTTGNYHWYLKKEINI 342


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = +1

Query: 211  LAAYITPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSS 336
            +AA +TPT+ +  S +  +++      ++ TGS+ +++ T+S
Sbjct: 941  VAASVTPTSSSSASSWSSSSEVDPSTAASATGSSTSSIATAS 982


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +1

Query: 169 LQALRALMSSQRPVLAAYITPTADAHNSEYIDAADARREWISAFTGSAGTAVVT 330
           L +L +L S+    LAA +TPT  A +       D+    IS+   SA ++V T
Sbjct: 166 LSSLASLSSASTDNLAASVTPTTVAASVASSVDTDSASATISSVVDSATSSVST 219


>SPAC1834.09 |mug51||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 638 LCDLLGAGSPSSILTSSTRLFEI 570
           LCD +GAG   S +T+  R F +
Sbjct: 275 LCDAIGAGLVDSFMTTCGRAFRL 297


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +1

Query: 280 REWISAFTGSAGTAVVTSSQALVWTD 357
           R W++++ G  G     S + L+W +
Sbjct: 43  RSWMTSYVGFNGETAAISEEQLIWAE 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,112,804
Number of Sequences: 5004
Number of extensions: 63444
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)